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Calcium in PDB 6zsm: Crystal Structure of Rsgcamp Double Mutant ILE80HIS/VAL116ILE in the on State (Non-Illuminated)

Protein crystallography data

The structure of Crystal Structure of Rsgcamp Double Mutant ILE80HIS/VAL116ILE in the on State (Non-Illuminated), PDB code: 6zsm was solved by R.Janowski, J.P.Fuenzalida-Werner, K.Mishra, A.C.Stiel, D.Niessing, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.46 / 1.95
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 121.54, 121.54, 96.96, 90, 90, 90
R / Rfree (%) 15.7 / 19.8

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Rsgcamp Double Mutant ILE80HIS/VAL116ILE in the on State (Non-Illuminated) (pdb code 6zsm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Crystal Structure of Rsgcamp Double Mutant ILE80HIS/VAL116ILE in the on State (Non-Illuminated), PDB code: 6zsm:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 6zsm

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Calcium binding site 1 out of 5 in the Crystal Structure of Rsgcamp Double Mutant ILE80HIS/VAL116ILE in the on State (Non-Illuminated)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Rsgcamp Double Mutant ILE80HIS/VAL116ILE in the on State (Non-Illuminated) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:44.5
occ:1.00
OD1 A:ASP432 2.2 45.3 1.0
O A:HOH658 2.3 41.2 1.0
O A:GLN438 2.3 45.6 1.0
OD1 A:ASP436 2.4 47.5 1.0
OE1 A:GLU443 2.5 45.4 1.0
OE2 A:GLU443 2.5 49.4 1.0
OD1 A:ASP434 2.6 53.3 1.0
CD A:GLU443 2.8 52.0 1.0
CG A:ASP436 3.2 48.9 1.0
CG A:ASP432 3.3 49.6 1.0
CG A:ASP434 3.4 50.7 1.0
C A:GLN438 3.5 43.2 1.0
OD2 A:ASP436 3.5 46.3 1.0
OD2 A:ASP434 3.7 52.3 1.0
OD2 A:ASP432 4.1 46.5 1.0
CA A:ASP432 4.1 54.2 1.0
N A:ASP436 4.2 49.4 1.0
N A:GLN438 4.2 44.6 1.0
CB A:ASP432 4.3 50.1 1.0
N A:ASP434 4.3 55.3 1.0
N A:VAL439 4.4 41.9 1.0
CB A:ASP436 4.4 48.0 1.0
CG A:GLU443 4.4 49.3 1.0
CA A:VAL439 4.4 38.8 1.0
N A:ASN440 4.4 39.5 1.0
CA A:GLN438 4.4 44.1 1.0
C A:ASP432 4.5 54.4 1.0
N A:ILE433 4.5 57.3 1.0
N A:GLY435 4.6 52.3 1.0
CB A:ASP434 4.6 55.7 1.0
CA A:ASP436 4.7 47.8 1.0
CA A:ASP434 4.8 57.6 1.0
C A:ASP434 4.8 55.7 1.0
N A:GLY437 4.8 51.7 1.0
C A:VAL439 4.9 36.7 1.0
CB A:GLN438 4.9 46.8 1.0
CG A:ASN440 4.9 54.5 1.0

Calcium binding site 2 out of 5 in 6zsm

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Calcium binding site 2 out of 5 in the Crystal Structure of Rsgcamp Double Mutant ILE80HIS/VAL116ILE in the on State (Non-Illuminated)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Rsgcamp Double Mutant ILE80HIS/VAL116ILE in the on State (Non-Illuminated) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:27.7
occ:1.00
OD1 A:ASP323 2.3 27.2 1.0
O A:THR329 2.3 26.7 1.0
OD1 A:ASP327 2.3 26.3 1.0
OD1 A:ASP325 2.4 28.3 1.0
O A:HOH707 2.4 39.9 1.0
OE2 A:GLU334 2.5 28.6 1.0
OE1 A:GLU334 2.6 26.8 1.0
CD A:GLU334 2.9 30.0 1.0
CG A:ASP327 3.3 27.7 1.0
CG A:ASP325 3.3 30.1 1.0
CG A:ASP323 3.4 26.7 1.0
C A:THR329 3.5 27.7 1.0
OD2 A:ASP325 3.8 28.3 1.0
OD2 A:ASP327 3.9 27.7 1.0
CA A:ASP323 4.0 27.9 1.0
CB A:ASP323 4.2 26.9 1.0
N A:THR329 4.2 25.7 1.0
N A:ASP327 4.2 27.0 1.0
OD2 A:ASP323 4.4 25.3 1.0
CB A:ASP327 4.4 28.4 1.0
O A:HOH618 4.4 37.1 1.0
CG A:GLU334 4.4 28.8 1.0
CA A:THR329 4.4 26.2 1.0
C A:ASP323 4.4 28.6 1.0
N A:ILE330 4.5 26.0 1.0
N A:ASP325 4.5 27.6 1.0
CA A:ILE330 4.6 26.0 1.0
CG2 A:THR329 4.6 33.1 1.0
CB A:ASP325 4.6 30.5 1.0
N A:GLY326 4.7 25.9 1.0
CA A:ASP327 4.7 27.3 1.0
N A:LYS324 4.7 29.4 1.0
N A:GLY328 4.8 26.9 1.0
O A:HOH725 4.9 30.9 1.0
N A:THR331 4.9 26.3 1.0
CA A:ASP325 4.9 28.2 1.0
C A:ASP327 4.9 26.4 1.0
C A:ASP325 4.9 28.2 1.0
O A:HOH664 5.0 33.1 1.0

Calcium binding site 3 out of 5 in 6zsm

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Calcium binding site 3 out of 5 in the Crystal Structure of Rsgcamp Double Mutant ILE80HIS/VAL116ILE in the on State (Non-Illuminated)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Rsgcamp Double Mutant ILE80HIS/VAL116ILE in the on State (Non-Illuminated) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca503

b:29.7
occ:1.00
OD1 A:ASP359 2.2 29.0 1.0
O A:HOH641 2.2 35.6 1.0
OD1 A:ASP361 2.4 32.3 1.0
O A:THR365 2.4 25.9 1.0
OD1 A:ASP363 2.4 31.8 1.0
OE1 A:GLU370 2.5 28.8 1.0
OE2 A:GLU370 2.6 28.3 1.0
CD A:GLU370 2.9 30.0 1.0
CG A:ASP363 3.2 34.2 1.0
CG A:ASP361 3.3 38.1 1.0
CG A:ASP359 3.4 27.5 1.0
C A:THR365 3.6 28.1 1.0
OD2 A:ASP361 3.7 38.8 1.0
OD2 A:ASP363 3.8 36.5 1.0
OG1 A:THR365 4.0 29.5 1.0
N A:ASP367 4.1 27.3 1.0
N A:THR365 4.2 28.4 1.0
OD2 A:ASP359 4.2 29.7 1.0
N A:ASP363 4.2 34.5 1.0
CB A:ASP363 4.2 34.6 1.0
N A:ASP361 4.3 36.5 1.0
CB A:ASP359 4.3 28.6 1.0
CA A:ASP359 4.3 29.9 1.0
CG A:GLU370 4.4 27.9 1.0
CA A:THR365 4.4 26.8 1.0
OD2 A:ASP367 4.4 30.7 0.6
CG A:ASP367 4.5 29.4 0.6
N A:ILE366 4.5 25.7 1.0
CB A:ASP361 4.5 38.4 1.0
CA A:ILE366 4.5 26.2 1.0
N A:GLY362 4.6 34.6 1.0
C A:ASP359 4.6 28.1 1.0
CA A:CA505 4.6 84.0 1.0
CA A:ASP363 4.7 34.5 1.0
N A:GLY364 4.7 29.8 1.0
CB A:ASP367 4.7 31.4 1.0
N A:ALA360 4.7 29.0 1.0
CA A:ASP361 4.8 35.8 1.0
C A:ILE366 4.8 27.7 1.0
O A:HOH645 4.8 41.9 1.0
OD1 A:ASP367 4.8 26.7 0.6
CB A:THR365 4.8 28.4 1.0
C A:ASP361 4.9 39.5 1.0
C A:ASP363 4.9 34.4 1.0

Calcium binding site 4 out of 5 in 6zsm

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Calcium binding site 4 out of 5 in the Crystal Structure of Rsgcamp Double Mutant ILE80HIS/VAL116ILE in the on State (Non-Illuminated)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Rsgcamp Double Mutant ILE80HIS/VAL116ILE in the on State (Non-Illuminated) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca504

b:42.5
occ:1.00
O A:TYR402 2.2 43.6 1.0
OD1 A:ASP396 2.3 40.2 1.0
OE1 A:GLU407 2.3 43.0 1.0
OD1 A:ASP398 2.3 47.4 1.0
OE2 A:GLU407 2.4 42.4 1.0
OD1 A:ASN400 2.4 47.4 1.0
O A:HOH686 2.5 40.7 1.0
CD A:GLU407 2.7 40.7 1.0
CG A:ASP398 3.2 57.4 1.0
C A:TYR402 3.4 41.8 1.0
CG A:ASN400 3.4 51.5 1.0
CG A:ASP396 3.5 44.4 1.0
OD2 A:ASP398 3.6 55.6 1.0
N A:TYR402 4.1 40.0 1.0
ND2 A:ASN400 4.1 47.0 1.0
N A:ASN400 4.2 47.9 1.0
CG A:GLU407 4.2 42.0 1.0
CA A:TYR402 4.2 40.3 1.0
CA A:ASP396 4.2 43.3 1.0
OD2 A:ASP396 4.3 38.6 1.0
O A:HOH637 4.3 45.7 1.0
N A:ASP398 4.3 50.6 1.0
CB A:ASN400 4.3 51.5 1.0
N A:ILE403 4.3 41.1 1.0
CB A:ASP396 4.4 42.2 1.0
CB A:ASP398 4.4 53.1 1.0
C A:ASP396 4.5 44.5 1.0
CA A:ILE403 4.5 41.7 1.0
N A:GLY399 4.5 48.2 1.0
O A:HOH621 4.5 48.3 1.0
CB A:TYR402 4.7 45.8 1.0
CA A:ASN400 4.7 48.0 1.0
N A:SER404 4.7 43.3 1.0
CA A:ASP398 4.7 50.2 1.0
N A:GLY401 4.7 42.5 1.0
N A:LYS397 4.8 49.3 1.0
O A:ASP396 4.8 41.5 1.0
C A:ASP398 4.8 50.0 1.0
C A:ASN400 4.9 52.8 1.0

Calcium binding site 5 out of 5 in 6zsm

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Calcium binding site 5 out of 5 in the Crystal Structure of Rsgcamp Double Mutant ILE80HIS/VAL116ILE in the on State (Non-Illuminated)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Rsgcamp Double Mutant ILE80HIS/VAL116ILE in the on State (Non-Illuminated) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca505

b:84.0
occ:1.00
O A:HOH605 2.5 48.5 1.0
O A:HOH758 2.5 60.1 1.0
OD2 A:ASP361 2.6 38.8 1.0
O A:HOH889 2.6 62.5 1.0
O A:HOH641 2.8 35.6 1.0
OD2 A:ASP363 3.1 36.5 1.0
O A:HOH866 3.1 41.0 1.0
OD2 A:ASP367 3.3 30.7 0.6
O A:HOH767 3.6 52.4 1.0
CG A:ASP361 3.7 38.1 1.0
CG A:ASP363 3.8 34.2 1.0
O1 A:FMT511 3.9 81.3 1.0
OD1 A:ASP361 4.2 32.3 1.0
O A:HOH913 4.2 61.6 1.0
CG A:ASP367 4.3 29.4 0.6
CB A:ASP363 4.4 34.6 1.0
CB A:ASP367 4.4 31.4 1.0
OD1 A:ASP363 4.5 31.8 1.0
O A:HOH970 4.5 58.4 1.0
O A:HOH610 4.6 60.7 1.0
C A:FMT511 4.6 84.0 1.0
CA A:CA503 4.6 29.7 1.0
CB A:ASP361 4.9 38.4 1.0
OG1 A:THR365 5.0 29.5 1.0

Reference:

J.P.Fuenzalida-Werner, K.Mishra, R.Janowski, D.Niessing, A.C.Stiel. Genetically Encoded Photo-Switchable Indicators, New Tools For Optoacoustic Imaging and Fluorescence Nanoscopy To Be Published.
Page generated: Fri Nov 5 11:33:26 2021

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