Atomistry » Calcium » PDB 6zr0-7aq1 » 7alj
Atomistry »
  Calcium »
    PDB 6zr0-7aq1 »
      7alj »

Calcium in PDB 7alj: Structure of Drosophila Notch Egf Domains 11-13

Protein crystallography data

The structure of Structure of Drosophila Notch Egf Domains 11-13, PDB code: 7alj was solved by R.Suckling, S.Johnson, S.M.Lea, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.20 / 1.52
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 180.82, 31.286, 21.795, 90, 90.77, 90
R / Rfree (%) 20.1 / 24.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Drosophila Notch Egf Domains 11-13 (pdb code 7alj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of Drosophila Notch Egf Domains 11-13, PDB code: 7alj:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 7alj

Go back to Calcium Binding Sites List in 7alj
Calcium binding site 1 out of 2 in the Structure of Drosophila Notch Egf Domains 11-13


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Drosophila Notch Egf Domains 11-13 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca601

b:20.7
occ:1.00
OD1 A:ASP526 2.3 19.8 1.0
OE1 A:GLU529 2.3 24.2 1.0
O A:ILE527 2.3 22.9 1.0
OD2 A:ASP543 2.4 23.7 1.0
O A:LYS544 2.4 24.1 1.0
O A:HOH717 2.4 22.5 1.0
OD1 A:ASP543 2.5 23.2 1.0
CG A:ASP543 2.8 22.4 1.0
CD A:GLU529 3.3 28.3 1.0
CG A:ASP526 3.4 24.8 1.0
H A:GLU529 3.4 27.3 1.0
C A:ILE527 3.5 20.2 1.0
C A:LYS544 3.6 23.6 1.0
H A:ASN546 3.6 26.6 1.0
HA A:ILE545 3.6 41.1 1.0
HA A:ASP528 3.7 25.1 1.0
OE2 A:GLU529 3.7 24.9 1.0
O A:HOH712 3.7 33.6 1.0
H A:LYS544 3.8 26.9 1.0
H A:GLY547 3.9 30.9 1.0
OD2 A:ASP526 3.9 27.6 1.0
O A:HOH734 4.1 29.0 1.0
N A:LYS544 4.1 22.4 1.0
N A:ILE527 4.2 17.5 1.0
N A:ASN546 4.2 22.1 1.0
C A:ASP526 4.2 19.2 1.0
N A:GLU529 4.2 22.8 1.0
O A:GLY547 4.2 24.6 1.0
CB A:ASP543 4.3 27.8 1.0
HB2 A:GLU529 4.3 31.4 1.0
HD13 A:ILE545 4.3 39.8 1.0
H A:ILE527 4.3 21.0 1.0
CA A:ILE545 4.4 34.2 1.0
CA A:ILE527 4.4 18.7 1.0
N A:ILE545 4.4 28.6 1.0
HB A:ILE527 4.4 23.4 1.0
CA A:ASP528 4.4 20.9 1.0
N A:ASP528 4.4 21.4 1.0
O A:ASP526 4.5 21.5 1.0
CA A:LYS544 4.5 24.0 1.0
CG A:GLU529 4.6 31.0 1.0
HB3 A:ASP543 4.6 33.4 1.0
CB A:ASP526 4.7 22.3 1.0
C A:ILE545 4.7 27.9 1.0
O A:GLY517 4.7 17.0 1.0
C A:ASP543 4.7 23.1 1.0
HB2 A:ASP543 4.8 33.4 1.0
HA A:ASP543 4.8 24.7 1.0
N A:GLY547 4.8 25.7 1.0
HA A:ASP526 4.8 24.4 1.0
HA A:ASN546 4.8 32.6 1.0
CB A:GLU529 4.8 26.1 1.0
CA A:ASP526 4.9 20.3 1.0
C A:ASP528 4.9 22.1 1.0
CA A:ASP543 4.9 20.6 1.0
CB A:ILE527 4.9 19.5 1.0
HG22 A:ILE527 5.0 29.8 1.0
HA A:LYS544 5.0 28.8 1.0

Calcium binding site 2 out of 2 in 7alj

Go back to Calcium Binding Sites List in 7alj
Calcium binding site 2 out of 2 in the Structure of Drosophila Notch Egf Domains 11-13


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Drosophila Notch Egf Domains 11-13 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca602

b:49.4
occ:0.81
HD21 A:ASN490 2.5 48.9 1.0
O A:ILE489 2.9 25.2 1.0
O A:HOH745 2.9 29.7 1.0
HA A:ASN490 3.0 20.5 1.0
O A:HOH732 3.1 28.6 1.0
HB3 A:ASP505 3.2 30.6 1.0
ND2 A:ASN490 3.2 40.7 1.0
HA A:PRO507 3.2 23.1 1.0
O A:ASP506 3.4 22.3 1.0
HD22 A:ASN490 3.4 48.9 1.0
C A:ASP506 3.6 22.2 1.0
C A:ILE489 3.9 34.3 1.0
CA A:ASN490 3.9 17.1 1.0
N A:PRO507 3.9 18.6 1.0
CA A:PRO507 4.0 19.2 1.0
HG3 A:PRO507 4.1 35.7 1.0
CB A:ASP505 4.1 25.5 1.0
O A:HOH728 4.1 29.1 1.0
HA A:ASP506 4.2 29.2 1.0
H A:GLU491 4.2 26.2 1.0
HB3 A:ASN488 4.3 33.5 1.0
CA A:ASP506 4.3 24.3 1.0
N A:ASP506 4.3 20.8 1.0
CG A:ASN490 4.3 46.9 1.0
N A:ASN490 4.3 22.9 1.0
H A:ASP506 4.4 25.0 1.0
CG A:ASP505 4.5 34.3 1.0
OD1 A:ASP505 4.5 43.8 1.0
H A:GLY508 4.5 27.0 1.0
CB A:ASN490 4.5 20.5 1.0
HD3 A:PRO507 4.5 31.8 1.0
O A:HOH760 4.6 47.2 1.0
C A:ASP505 4.6 19.8 1.0
HB3 A:ASN490 4.6 24.6 1.0
CD A:PRO507 4.7 26.5 1.0
HB2 A:ASP505 4.7 30.6 1.0
CG A:PRO507 4.7 29.7 1.0
HB3 A:PRO507 4.8 31.8 1.0
CB A:PRO507 4.8 26.5 1.0
N A:GLU491 4.8 21.8 1.0
H A:ILE489 4.9 24.2 1.0
CA A:ASP505 4.9 23.7 1.0
C A:ASN490 4.9 18.4 1.0
N A:ILE489 4.9 20.1 1.0
HA A:ASP505 5.0 28.5 1.0

Reference:

T.Martins, Y.Meng, B.Korona, R.Suckling, S.Johnson, P.A.Hanford, S.M.Lea, S.Bray. Delta C2 Domain Loops Contribute to Robust Notch Signalling Embo Rep. 2021.
ISSN: ESSN 1469-3178
Page generated: Wed Jul 9 20:42:54 2025

Last articles

Cd in 2F91
Cd in 2EV0
Cd in 2F5H
Cd in 2EIL
Cd in 2ENR
Cd in 2EIK
Cd in 2CN2
Cd in 2E0M
Cd in 2E76
Cd in 2E75
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy