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Calcium in PDB 7alj: Structure of Drosophila Notch Egf Domains 11-13

Protein crystallography data

The structure of Structure of Drosophila Notch Egf Domains 11-13, PDB code: 7alj was solved by R.Suckling, S.Johnson, S.M.Lea, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.20 / 1.52
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 180.82, 31.286, 21.795, 90, 90.77, 90
R / Rfree (%) 20.1 / 24.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Drosophila Notch Egf Domains 11-13 (pdb code 7alj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of Drosophila Notch Egf Domains 11-13, PDB code: 7alj:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 7alj

Go back to Calcium Binding Sites List in 7alj
Calcium binding site 1 out of 2 in the Structure of Drosophila Notch Egf Domains 11-13


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Drosophila Notch Egf Domains 11-13 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca601

b:20.7
occ:1.00
OD1 A:ASP526 2.3 19.8 1.0
OE1 A:GLU529 2.3 24.2 1.0
O A:ILE527 2.3 22.9 1.0
OD2 A:ASP543 2.4 23.7 1.0
O A:LYS544 2.4 24.1 1.0
O A:HOH717 2.4 22.5 1.0
OD1 A:ASP543 2.5 23.2 1.0
CG A:ASP543 2.8 22.4 1.0
CD A:GLU529 3.3 28.3 1.0
CG A:ASP526 3.4 24.8 1.0
H A:GLU529 3.4 27.3 1.0
C A:ILE527 3.5 20.2 1.0
C A:LYS544 3.6 23.6 1.0
H A:ASN546 3.6 26.6 1.0
HA A:ILE545 3.6 41.1 1.0
HA A:ASP528 3.7 25.1 1.0
OE2 A:GLU529 3.7 24.9 1.0
O A:HOH712 3.7 33.6 1.0
H A:LYS544 3.8 26.9 1.0
H A:GLY547 3.9 30.9 1.0
OD2 A:ASP526 3.9 27.6 1.0
O A:HOH734 4.1 29.0 1.0
N A:LYS544 4.1 22.4 1.0
N A:ILE527 4.2 17.5 1.0
N A:ASN546 4.2 22.1 1.0
C A:ASP526 4.2 19.2 1.0
N A:GLU529 4.2 22.8 1.0
O A:GLY547 4.2 24.6 1.0
CB A:ASP543 4.3 27.8 1.0
HB2 A:GLU529 4.3 31.4 1.0
HD13 A:ILE545 4.3 39.8 1.0
H A:ILE527 4.3 21.0 1.0
CA A:ILE545 4.4 34.2 1.0
CA A:ILE527 4.4 18.7 1.0
N A:ILE545 4.4 28.6 1.0
HB A:ILE527 4.4 23.4 1.0
CA A:ASP528 4.4 20.9 1.0
N A:ASP528 4.4 21.4 1.0
O A:ASP526 4.5 21.5 1.0
CA A:LYS544 4.5 24.0 1.0
CG A:GLU529 4.6 31.0 1.0
HB3 A:ASP543 4.6 33.4 1.0
CB A:ASP526 4.7 22.3 1.0
C A:ILE545 4.7 27.9 1.0
O A:GLY517 4.7 17.0 1.0
C A:ASP543 4.7 23.1 1.0
HB2 A:ASP543 4.8 33.4 1.0
HA A:ASP543 4.8 24.7 1.0
N A:GLY547 4.8 25.7 1.0
HA A:ASP526 4.8 24.4 1.0
HA A:ASN546 4.8 32.6 1.0
CB A:GLU529 4.8 26.1 1.0
CA A:ASP526 4.9 20.3 1.0
C A:ASP528 4.9 22.1 1.0
CA A:ASP543 4.9 20.6 1.0
CB A:ILE527 4.9 19.5 1.0
HG22 A:ILE527 5.0 29.8 1.0
HA A:LYS544 5.0 28.8 1.0

Calcium binding site 2 out of 2 in 7alj

Go back to Calcium Binding Sites List in 7alj
Calcium binding site 2 out of 2 in the Structure of Drosophila Notch Egf Domains 11-13


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Drosophila Notch Egf Domains 11-13 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca602

b:49.4
occ:0.81
HD21 A:ASN490 2.5 48.9 1.0
O A:ILE489 2.9 25.2 1.0
O A:HOH745 2.9 29.7 1.0
HA A:ASN490 3.0 20.5 1.0
O A:HOH732 3.1 28.6 1.0
HB3 A:ASP505 3.2 30.6 1.0
ND2 A:ASN490 3.2 40.7 1.0
HA A:PRO507 3.2 23.1 1.0
O A:ASP506 3.4 22.3 1.0
HD22 A:ASN490 3.4 48.9 1.0
C A:ASP506 3.6 22.2 1.0
C A:ILE489 3.9 34.3 1.0
CA A:ASN490 3.9 17.1 1.0
N A:PRO507 3.9 18.6 1.0
CA A:PRO507 4.0 19.2 1.0
HG3 A:PRO507 4.1 35.7 1.0
CB A:ASP505 4.1 25.5 1.0
O A:HOH728 4.1 29.1 1.0
HA A:ASP506 4.2 29.2 1.0
H A:GLU491 4.2 26.2 1.0
HB3 A:ASN488 4.3 33.5 1.0
CA A:ASP506 4.3 24.3 1.0
N A:ASP506 4.3 20.8 1.0
CG A:ASN490 4.3 46.9 1.0
N A:ASN490 4.3 22.9 1.0
H A:ASP506 4.4 25.0 1.0
CG A:ASP505 4.5 34.3 1.0
OD1 A:ASP505 4.5 43.8 1.0
H A:GLY508 4.5 27.0 1.0
CB A:ASN490 4.5 20.5 1.0
HD3 A:PRO507 4.5 31.8 1.0
O A:HOH760 4.6 47.2 1.0
C A:ASP505 4.6 19.8 1.0
HB3 A:ASN490 4.6 24.6 1.0
CD A:PRO507 4.7 26.5 1.0
HB2 A:ASP505 4.7 30.6 1.0
CG A:PRO507 4.7 29.7 1.0
HB3 A:PRO507 4.8 31.8 1.0
CB A:PRO507 4.8 26.5 1.0
N A:GLU491 4.8 21.8 1.0
H A:ILE489 4.9 24.2 1.0
CA A:ASP505 4.9 23.7 1.0
C A:ASN490 4.9 18.4 1.0
N A:ILE489 4.9 20.1 1.0
HA A:ASP505 5.0 28.5 1.0

Reference:

T.Martins, Y.Meng, B.Korona, R.Suckling, S.Johnson, P.A.Hanford, S.M.Lea, S.Bray. Delta C2 Domain Loops Contribute to Robust Notch Signalling Embo Rep. 2021.
ISSN: ESSN 1469-3178
Page generated: Sat Aug 21 12:35:07 2021

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