Calcium in PDB 7aug: Crystal Structure of RSGCAMP1.3 in the on State

The structure of Crystal Structure of RSGCAMP1.3 in the on State, PDB code: 7aug was solved by R.Janowski, J.P.Fuenzalida-Werner, K.Mishra, A.C.Stiel, D.Niessing, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.44 / 2.04
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	121.852, 121.852, 96.416, 90, 90, 90
R / Rfree (%)	16.5 / 20.7

The binding sites of Calcium atom in the Crystal Structure of RSGCAMP1.3 in the on State (pdb code 7aug). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Crystal Structure of RSGCAMP1.3 in the on State, PDB code: 7aug:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in the Crystal Structure of RSGCAMP1.3 in the on State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of RSGCAMP1.3 in the on State within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:55.4 occ:1.00 OD1 A:ASP436 2.2 60.4 1.0 O A:HOH649 2.3 45.7 1.0 O A:GLN438 2.4 47.5 1.0 OD1 A:ASP432 2.4 56.5 1.0 OE1 A:GLU443 2.5 49.4 1.0 OE2 A:GLU443 2.6 62.7 1.0 OD1 A:ASP434 2.6 53.4 1.0 CD A:GLU443 2.9 60.9 1.0 CG A:ASP436 3.1 62.4 1.0 CG A:ASP434 3.4 55.3 1.0 CG A:ASP432 3.5 64.1 1.0 OD2 A:ASP436 3.5 57.5 1.0 C A:GLN438 3.6 49.7 1.0 OD2 A:ASP434 3.7 58.6 1.0 OD2 A:ASP432 4.2 65.0 1.0 N A:GLN438 4.2 50.4 1.0 N A:ASP436 4.2 52.6 1.0 CA A:ASP432 4.3 68.7 1.0 CB A:ASP436 4.3 56.3 1.0 CB A:ASP432 4.3 69.0 1.0 N A:ASP434 4.4 72.1 1.0 CG A:GLU443 4.4 60.5 1.0 N A:VAL439 4.4 48.5 1.0 CA A:GLN438 4.4 50.1 1.0 N A:ASN440 4.4 42.5 1.0 CA A:VAL439 4.4 47.0 1.0 N A:GLY435 4.6 62.5 1.0 CB A:ASP434 4.6 63.9 1.0 N A:ILE433 4.6 72.8 1.0 C A:ASP432 4.6 69.8 1.0 CA A:ASP436 4.7 51.4 1.0 N A:GLY437 4.7 59.3 1.0 CA A:ASP434 4.8 66.8 1.0 C A:ASP434 4.8 69.2 1.0 C A:VAL439 4.9 37.2 1.0 CB A:GLN438 4.9 53.6 1.0 OD1 A:ASN440 4.9 62.7 1.0 C A:ASP436 4.9 51.1 1.0 CG A:ASN440 5.0 59.7 1.0

Calcium binding site 2 out of 8 in the Crystal Structure of RSGCAMP1.3 in the on State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of RSGCAMP1.3 in the on State within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:28.5 occ:1.00 O A:HOH773 2.2 38.3 1.0 OD1 A:ASP323 2.3 28.2 1.0 OD1 A:ASP327 2.3 27.5 1.0 O A:THR329 2.3 29.2 1.0 OD1 A:ASP325 2.4 32.6 1.0 OE1 A:GLU334 2.5 29.2 1.0 OE2 A:GLU334 2.6 31.5 1.0 CD A:GLU334 2.9 34.0 1.0 CG A:ASP327 3.3 31.8 1.0 CG A:ASP325 3.4 32.5 1.0 CG A:ASP323 3.5 27.8 1.0 C A:THR329 3.6 30.0 1.0 OD2 A:ASP325 3.8 28.5 1.0 OD2 A:ASP327 3.9 29.4 1.0 CA A:ASP323 4.1 29.7 1.0 N A:THR329 4.2 26.7 1.0 CB A:ASP323 4.2 28.0 1.0 N A:ASP327 4.2 27.5 1.0 CB A:ASP327 4.4 31.2 1.0 CG A:GLU334 4.4 31.1 1.0 OD2 A:ASP323 4.4 27.3 1.0 CA A:THR329 4.4 28.7 1.0 C A:ASP323 4.4 30.6 1.0 O A:HOH646 4.5 39.9 1.0 N A:ASP325 4.5 31.2 1.0 N A:ILE330 4.5 30.1 1.0 CG2 A:THR329 4.5 31.4 1.0 CB A:ASP325 4.6 32.2 1.0 CA A:ILE330 4.6 28.4 1.0 N A:GLY326 4.7 29.5 1.0 N A:LYS324 4.7 32.5 1.0 CA A:ASP327 4.7 28.4 1.0 N A:GLY328 4.7 28.2 1.0 CA A:ASP325 4.9 30.3 1.0 O A:HOH712 4.9 31.1 1.0 C A:ASP325 4.9 28.5 1.0 C A:ASP327 4.9 27.0 1.0 O A:ASP323 4.9 27.8 1.0 N A:THR331 5.0 29.6 1.0

Calcium binding site 3 out of 8 in the Crystal Structure of RSGCAMP1.3 in the on State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of RSGCAMP1.3 in the on State within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:28.8 occ:1.00 O A:HOH601 2.0 21.8 0.5 OD1 A:ASP359 2.2 25.6 1.0 OD1 A:ASP361 2.4 32.9 1.0 O A:THR365 2.4 25.1 1.0 OD1 A:ASP363 2.4 34.5 1.0 OE1 A:GLU370 2.4 30.7 1.0 OE2 A:GLU370 2.6 27.8 1.0 CD A:GLU370 2.9 31.1 1.0 OD1 A:ASP367 2.9 40.5 0.5 CG A:ASP361 3.3 36.6 1.0 CG A:ASP363 3.3 36.0 1.0 CG A:ASP359 3.4 31.2 1.0 C A:THR365 3.6 27.8 1.0 OD2 A:ASP361 3.7 42.7 1.0 OD2 A:ASP363 3.9 40.8 1.0 OG1 A:THR365 4.1 30.6 1.0 CG A:ASP367 4.1 34.0 0.5 OD2 A:ASP359 4.1 30.2 1.0 N A:THR365 4.1 29.7 1.0 N A:ASP363 4.2 33.9 1.0 N A:ASP367 4.2 26.9 0.5 N A:ASP367 4.2 24.0 0.5 N A:ASP361 4.3 34.9 1.0 CA A:ASP359 4.3 28.9 1.0 CB A:ASP359 4.3 29.3 1.0 CB A:ASP363 4.3 34.8 1.0 CG A:GLU370 4.4 27.6 1.0 CA A:THR365 4.4 30.3 1.0 CB A:ASP361 4.5 35.4 1.0 N A:ILE366 4.5 26.9 1.0 C A:ASP359 4.5 29.9 1.0 N A:GLY362 4.5 32.6 1.0 CA A:ILE366 4.6 28.4 1.0 N A:ALA360 4.6 27.8 1.0 CG A:ASP367 4.6 20.9 0.5 N A:GLY364 4.7 31.8 1.0 CA A:ASP363 4.7 35.0 1.0 OD2 A:ASP367 4.7 22.1 0.5 CA A:ASP361 4.7 32.6 1.0 O A:HOH636 4.7 37.9 1.0 CB A:ASP367 4.8 31.6 0.5 C A:ASP361 4.8 35.1 1.0 C A:ILE366 4.9 26.9 1.0 CB A:ASP367 4.9 21.9 0.5 CB A:THR365 4.9 32.0 1.0 C A:ASP363 4.9 35.3 1.0 OD1 A:ASP367 4.9 20.7 0.5

Calcium binding site 4 out of 8 in the Crystal Structure of RSGCAMP1.3 in the on State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of RSGCAMP1.3 in the on State within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:51.8 occ:1.00 O A:TYR402 2.1 48.4 1.0 OE1 A:GLU407 2.3 42.4 1.0 OD1 A:ASP396 2.4 52.2 1.0 OD1 A:ASN400 2.4 56.3 1.0 OD1 A:ASP398 2.5 57.0 1.0 OE2 A:GLU407 2.5 46.1 1.0 O A:HOH621 2.6 59.1 1.0 CD A:GLU407 2.8 38.9 1.0 CG A:ASP398 3.1 65.4 1.0 CG A:ASN400 3.3 63.8 1.0 C A:TYR402 3.3 45.7 1.0 OD2 A:ASP398 3.4 62.7 1.0 CG A:ASP396 3.5 52.9 1.0 ND2 A:ASN400 3.9 73.3 1.0 O A:HOH615 3.9 51.8 1.0 N A:TYR402 4.1 37.6 1.0 CA A:TYR402 4.2 46.1 1.0 CB A:ASP398 4.2 68.6 1.0 CG A:GLU407 4.3 41.1 1.0 CA A:ASP396 4.3 47.5 1.0 N A:ASN400 4.3 52.6 1.0 CB A:ASN400 4.3 60.7 1.0 N A:ILE403 4.3 44.9 1.0 OD2 A:ASP396 4.3 48.5 1.0 N A:ASP398 4.3 62.5 1.0 CB A:ASP396 4.4 51.3 1.0 N A:GLY399 4.5 57.1 1.0 CA A:ILE403 4.5 50.9 1.0 C A:ASP396 4.5 49.4 1.0 N A:SER404 4.6 49.2 1.0 CA A:ASP398 4.6 61.1 1.0 CB A:TYR402 4.7 43.9 1.0 CA A:ASN400 4.7 55.3 1.0 C A:ASP398 4.8 61.0 1.0 N A:GLY401 4.8 49.7 1.0 N A:LYS397 4.9 51.2 1.0 O A:ASP396 4.9 52.1 1.0 C A:ASN400 5.0 57.7 1.0

Calcium binding site 5 out of 8 in the Crystal Structure of RSGCAMP1.3 in the on State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of RSGCAMP1.3 in the on State within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca505 b:69.7 occ:1.00 N A:ARG81 3.2 26.2 1.0 O1 A:FMT510 3.4 41.8 1.0 O A:HOH686 3.4 46.7 1.0 NH1 A:ARG377 3.5 90.3 1.0 O A:ARG81 3.8 29.3 1.0 CB A:ARG81 3.9 27.6 1.0 CA A:PHE80 3.9 26.5 1.0 CG A:PHE80 4.0 24.7 1.0 CA A:ARG81 4.0 27.6 1.0 CD2 A:PHE80 4.0 28.8 1.0 C A:PHE80 4.1 26.0 1.0 CD1 A:PHE80 4.1 29.4 1.0 C A:FMT510 4.1 62.8 1.0 CE1 A:PHE80 4.2 31.2 1.0 CE2 A:PHE80 4.3 28.6 1.0 CZ A:ARG377 4.3 83.0 1.0 CZ A:PHE80 4.3 31.9 1.0 C A:ARG81 4.4 26.4 1.0 CE1 A:TYR381 4.4 40.0 1.0 CD1 A:TYR381 4.4 38.9 1.0 NH2 A:ARG377 4.4 83.9 1.0 CG A:ARG81 4.5 29.4 1.0 CB A:PHE80 4.6 25.8 1.0 CZ A:TYR381 4.6 42.5 1.0 CG A:TYR381 4.6 40.2 1.0 O A:LYS79 4.6 32.4 1.0 CE2 A:TYR381 4.7 39.4 1.0 CD2 A:TYR381 4.7 41.7 1.0 CD A:ARG81 4.8 31.0 1.0

Calcium binding site 6 out of 8 in the Crystal Structure of RSGCAMP1.3 in the on State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of RSGCAMP1.3 in the on State within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca506 b:87.4 occ:1.00 OH A:TYR381 3.0 46.9 1.0 O A:HOH805 3.6 57.6 1.0 CB A:SER118 3.7 35.2 1.0 O A:SER118 3.7 34.2 1.0 O A:HOH873 3.9 52.5 1.0 CE1 A:TYR381 3.9 40.0 1.0 CZ A:TYR381 3.9 42.5 1.0 CD1 A:LEU120 4.0 41.2 1.0 C A:SER118 4.3 36.1 1.0 O A:HOH628 4.4 42.7 1.0 CZ A:PHE80 4.5 31.9 1.0 CA A:SER118 4.6 37.6 1.0 NZ A:LYS380 4.6 77.6 1.0 O A:HOH666 4.6 42.0 1.0 CE A:LYS380 4.6 67.7 1.0 OG A:SER118 4.7 53.8 1.0 O A:HOH694 4.9 37.4 1.0 CE1 A:PHE80 5.0 31.2 1.0

Calcium binding site 7 out of 8 in the Crystal Structure of RSGCAMP1.3 in the on State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of RSGCAMP1.3 in the on State within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca507 b:94.2 occ:1.00 O A:HOH831 3.1 57.5 1.0 OE2 A:GLU163 3.5 59.5 1.0 O A:PHE166 3.6 37.9 1.0 C A:PHE166 4.0 35.5 1.0 CG A:GLU163 4.1 48.5 1.0 CA A:THR167 4.2 39.6 1.0 CD A:GLU163 4.3 59.5 1.0 N A:THR167 4.3 38.2 1.0 O A:GLU163 4.3 37.1 1.0 CB A:PHE166 4.4 31.8 1.0 OG1 A:THR196 4.4 33.6 1.0 CB A:ALA195 4.4 34.5 1.0 O A:HOH809 4.4 36.8 1.0 N A:THR196 4.4 29.9 1.0 CE A:LYS243 4.6 28.6 1.0 C A:ALA195 4.6 33.6 1.0 CA A:THR196 4.7 31.0 1.0 CG2 A:THR167 4.7 42.1 1.0 NZ A:LYS237 4.8 55.9 1.0 CA A:PHE166 4.8 32.4 1.0 O A:HOH640 4.9 38.6 1.0 O A:ALA195 5.0 28.4 1.0

Calcium binding site 8 out of 8 in the Crystal Structure of RSGCAMP1.3 in the on State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of RSGCAMP1.3 in the on State within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca508 b:83.6 occ:1.00 C2 A:EDO532 3.4 68.1 1.0 O A:HIS94 3.5 23.7 1.0 O A:PHE78 3.6 28.3 1.0 O2 A:EDO532 3.8 76.2 1.0 N A:PHE78 3.9 26.1 1.0 CB A:ASN77 4.0 30.5 1.0 CD1 A:TYR93 4.0 30.9 1.0 CZ A:TYR95 4.0 29.2 1.0 C A:PHE78 4.0 25.8 1.0 N A:HIS94 4.1 24.9 1.0 CB A:TYR93 4.1 25.6 1.0 OH A:TYR95 4.1 33.5 1.0 OD1 A:ASN77 4.1 44.3 1.0 CE1 A:TYR95 4.2 28.4 1.0 C A:HIS94 4.3 25.1 1.0 CA A:TYR93 4.3 24.2 1.0 CE2 A:TYR95 4.3 29.6 1.0 C A:TYR93 4.4 23.9 1.0 CA A:PHE78 4.4 24.3 1.0 CG A:ASN77 4.5 33.5 1.0 C A:ASN77 4.5 25.5 1.0 C1 A:EDO532 4.5 61.7 1.0 CG A:TYR93 4.5 29.2 1.0 CA A:ASN77 4.6 25.7 1.0 O1 A:EDO532 4.6 65.3 1.0 CD1 A:TYR95 4.7 28.5 1.0 O2 A:FMT511 4.8 51.9 1.0 N A:LYS79 4.8 25.9 1.0 CA A:HIS94 4.9 23.9 1.0 CD2 A:TYR95 4.9 27.8 1.0

J.P.Fuenzalida-Werner, K.Mishra, R.Janowski, D.Niessing, A.C.Stiel. Genetically Encoded Photo-Switchable Indicators, New Tools For Optoacoustic Imaging and Fluorescence Nanoscopy To Be Published.