Calcium in PDB 7b5e: Structure of Calcium-Bound MTMEM16A(Ac)-I551A Chloride Channel at 4.1 A Resolution
Calcium Binding Sites:
The binding sites of Calcium atom in the Structure of Calcium-Bound MTMEM16A(Ac)-I551A Chloride Channel at 4.1 A Resolution
(pdb code 7b5e). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the
Structure of Calcium-Bound MTMEM16A(Ac)-I551A Chloride Channel at 4.1 A Resolution, PDB code: 7b5e:
Jump to Calcium binding site number:
1;
2;
3;
4;
Calcium binding site 1 out
of 4 in 7b5e
Go back to
Calcium Binding Sites List in 7b5e
Calcium binding site 1 out
of 4 in the Structure of Calcium-Bound MTMEM16A(Ac)-I551A Chloride Channel at 4.1 A Resolution
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of Calcium-Bound MTMEM16A(Ac)-I551A Chloride Channel at 4.1 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1001
b:43.1
occ:1.00
|
OD1
|
A:ASN651
|
2.5
|
52.4
|
1.0
|
OD1
|
A:ASN650
|
2.5
|
50.9
|
1.0
|
N
|
A:ASN651
|
2.7
|
52.4
|
1.0
|
C
|
A:ASN650
|
2.8
|
50.9
|
1.0
|
CB
|
A:ASN650
|
2.9
|
50.9
|
1.0
|
OE2
|
A:GLU705
|
3.0
|
32.0
|
1.0
|
CG
|
A:ASN650
|
3.0
|
50.9
|
1.0
|
CA
|
A:ASN651
|
3.2
|
52.4
|
1.0
|
CG
|
A:ASN651
|
3.3
|
52.4
|
1.0
|
O
|
A:ASN650
|
3.3
|
50.9
|
1.0
|
CA
|
A:ASN650
|
3.4
|
50.9
|
1.0
|
CA
|
A:CA1002
|
3.6
|
41.5
|
1.0
|
O
|
A:GLN646
|
3.6
|
46.5
|
1.0
|
OE1
|
A:GLU734
|
3.7
|
31.3
|
1.0
|
CD
|
A:GLU705
|
3.8
|
32.0
|
1.0
|
CB
|
A:ASN651
|
3.8
|
52.4
|
1.0
|
OE1
|
A:GLU705
|
4.0
|
32.0
|
1.0
|
ND2
|
A:ASN651
|
4.2
|
52.4
|
1.0
|
N
|
A:ASN650
|
4.3
|
50.9
|
1.0
|
ND2
|
A:ASN650
|
4.4
|
50.9
|
1.0
|
OE2
|
A:GLU734
|
4.4
|
31.3
|
1.0
|
CD
|
A:GLU734
|
4.5
|
31.3
|
1.0
|
C
|
A:ASN651
|
4.6
|
52.4
|
1.0
|
OD1
|
A:ASN730
|
4.6
|
30.9
|
1.0
|
C
|
A:GLN646
|
4.7
|
46.5
|
1.0
|
CG
|
A:GLU705
|
5.0
|
32.0
|
1.0
|
|
Calcium binding site 2 out
of 4 in 7b5e
Go back to
Calcium Binding Sites List in 7b5e
Calcium binding site 2 out
of 4 in the Structure of Calcium-Bound MTMEM16A(Ac)-I551A Chloride Channel at 4.1 A Resolution
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of Calcium-Bound MTMEM16A(Ac)-I551A Chloride Channel at 4.1 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1002
b:41.5
occ:1.00
|
OE2
|
A:GLU734
|
2.5
|
31.3
|
1.0
|
OE1
|
A:GLU705
|
2.5
|
32.0
|
1.0
|
OE2
|
A:GLU654
|
2.5
|
60.6
|
1.0
|
OE2
|
A:GLU702
|
2.5
|
33.0
|
1.0
|
OE1
|
A:GLU654
|
2.7
|
60.6
|
1.0
|
CD
|
A:GLU654
|
2.7
|
60.6
|
1.0
|
OE2
|
A:GLU705
|
3.1
|
32.0
|
1.0
|
CD
|
A:GLU705
|
3.1
|
32.0
|
1.0
|
CD
|
A:GLU734
|
3.4
|
31.3
|
1.0
|
OD1
|
A:ASN650
|
3.5
|
50.9
|
1.0
|
CD
|
A:GLU702
|
3.6
|
33.0
|
1.0
|
CA
|
A:CA1001
|
3.6
|
43.1
|
1.0
|
OE1
|
A:GLU734
|
3.7
|
31.3
|
1.0
|
CG
|
A:GLU654
|
3.9
|
60.6
|
1.0
|
OE1
|
A:GLU702
|
4.1
|
33.0
|
1.0
|
OD2
|
A:ASP738
|
4.2
|
36.4
|
1.0
|
CB
|
A:GLU654
|
4.2
|
60.6
|
1.0
|
OD1
|
A:ASP738
|
4.3
|
36.4
|
1.0
|
CG
|
A:GLU705
|
4.6
|
32.0
|
1.0
|
CG
|
A:ASP738
|
4.7
|
36.4
|
1.0
|
CG
|
A:ASN650
|
4.7
|
50.9
|
1.0
|
OD1
|
A:ASN651
|
4.8
|
52.4
|
1.0
|
CG
|
A:GLU734
|
4.8
|
31.3
|
1.0
|
CG
|
A:GLU702
|
4.9
|
33.0
|
1.0
|
O
|
A:ASN650
|
5.0
|
50.9
|
1.0
|
|
Calcium binding site 3 out
of 4 in 7b5e
Go back to
Calcium Binding Sites List in 7b5e
Calcium binding site 3 out
of 4 in the Structure of Calcium-Bound MTMEM16A(Ac)-I551A Chloride Channel at 4.1 A Resolution
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of Calcium-Bound MTMEM16A(Ac)-I551A Chloride Channel at 4.1 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1001
b:40.1
occ:1.00
|
OD1
|
B:ASN651
|
2.5
|
47.6
|
1.0
|
OD1
|
B:ASN650
|
2.5
|
47.5
|
1.0
|
N
|
B:ASN651
|
2.7
|
47.6
|
1.0
|
C
|
B:ASN650
|
2.8
|
47.5
|
1.0
|
CB
|
B:ASN650
|
2.9
|
47.5
|
1.0
|
OE2
|
B:GLU705
|
3.0
|
32.2
|
1.0
|
CG
|
B:ASN650
|
3.0
|
47.5
|
1.0
|
CA
|
B:ASN651
|
3.2
|
47.6
|
1.0
|
CG
|
B:ASN651
|
3.3
|
47.6
|
1.0
|
O
|
B:ASN650
|
3.3
|
47.5
|
1.0
|
CA
|
B:ASN650
|
3.4
|
47.5
|
1.0
|
CA
|
B:CA1002
|
3.6
|
38.8
|
1.0
|
O
|
B:GLN646
|
3.6
|
43.9
|
1.0
|
OE1
|
B:GLU734
|
3.7
|
30.0
|
1.0
|
CD
|
B:GLU705
|
3.8
|
32.2
|
1.0
|
CB
|
B:ASN651
|
3.8
|
47.6
|
1.0
|
OE1
|
B:GLU705
|
4.0
|
32.2
|
1.0
|
ND2
|
B:ASN651
|
4.2
|
47.6
|
1.0
|
N
|
B:ASN650
|
4.3
|
47.5
|
1.0
|
ND2
|
B:ASN650
|
4.4
|
47.5
|
1.0
|
OE2
|
B:GLU734
|
4.4
|
30.0
|
1.0
|
CD
|
B:GLU734
|
4.5
|
30.0
|
1.0
|
C
|
B:ASN651
|
4.6
|
47.6
|
1.0
|
OD1
|
B:ASN730
|
4.6
|
29.1
|
1.0
|
C
|
B:GLN646
|
4.7
|
43.9
|
1.0
|
CG
|
B:GLU705
|
5.0
|
32.2
|
1.0
|
|
Calcium binding site 4 out
of 4 in 7b5e
Go back to
Calcium Binding Sites List in 7b5e
Calcium binding site 4 out
of 4 in the Structure of Calcium-Bound MTMEM16A(Ac)-I551A Chloride Channel at 4.1 A Resolution
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of Calcium-Bound MTMEM16A(Ac)-I551A Chloride Channel at 4.1 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1002
b:38.8
occ:1.00
|
OE2
|
B:GLU734
|
2.5
|
30.0
|
1.0
|
OE1
|
B:GLU705
|
2.5
|
32.2
|
1.0
|
OE2
|
B:GLU654
|
2.5
|
56.7
|
1.0
|
OE2
|
B:GLU702
|
2.5
|
33.0
|
1.0
|
OE1
|
B:GLU654
|
2.6
|
56.7
|
1.0
|
CD
|
B:GLU654
|
2.7
|
56.7
|
1.0
|
OE2
|
B:GLU705
|
3.1
|
32.2
|
1.0
|
CD
|
B:GLU705
|
3.1
|
32.2
|
1.0
|
CD
|
B:GLU734
|
3.4
|
30.0
|
1.0
|
OD1
|
B:ASN650
|
3.5
|
47.5
|
1.0
|
CA
|
B:CA1001
|
3.6
|
40.1
|
1.0
|
CD
|
B:GLU702
|
3.6
|
33.0
|
1.0
|
OE1
|
B:GLU734
|
3.7
|
30.0
|
1.0
|
CG
|
B:GLU654
|
3.9
|
56.7
|
1.0
|
OE1
|
B:GLU702
|
4.1
|
33.0
|
1.0
|
OD2
|
B:ASP738
|
4.2
|
34.6
|
1.0
|
CB
|
B:GLU654
|
4.2
|
56.7
|
1.0
|
OD1
|
B:ASP738
|
4.3
|
34.6
|
1.0
|
CG
|
B:GLU705
|
4.6
|
32.2
|
1.0
|
CG
|
B:ASP738
|
4.7
|
34.6
|
1.0
|
CG
|
B:ASN650
|
4.7
|
47.5
|
1.0
|
OD1
|
B:ASN651
|
4.8
|
47.6
|
1.0
|
CG
|
B:GLU734
|
4.8
|
30.0
|
1.0
|
CG
|
B:GLU702
|
4.9
|
33.0
|
1.0
|
O
|
B:ASN650
|
5.0
|
47.5
|
1.0
|
|
Reference:
A.K.M.Lam,
J.Rheinberger,
C.Paulino,
R.Dutzler.
Gating the Pore of the Calcium-Activated Chloride Channel TMEM16A Nat Commun 2021.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-020-20787-9
Page generated: Thu Jul 18 23:12:50 2024
|