Calcium in PDB 7blz: Red Alga C.Merolae Photosystem I
Enzymatic activity of Red Alga C.Merolae Photosystem I
All present enzymatic activity of Red Alga C.Merolae Photosystem I:
1.97.1.12;
Other elements in 7blz:
The structure of Red Alga C.Merolae Photosystem I also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Red Alga C.Merolae Photosystem I
(pdb code 7blz). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Red Alga C.Merolae Photosystem I, PDB code: 7blz:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 7blz
Go back to
Calcium Binding Sites List in 7blz
Calcium binding site 1 out
of 2 in the Red Alga C.Merolae Photosystem I
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Red Alga C.Merolae Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca852
b:52.5
occ:1.00
|
HE2
|
B:HIS204
|
1.8
|
41.6
|
1.0
|
HD2
|
B:HIS204
|
2.1
|
41.6
|
1.0
|
NE2
|
B:HIS204
|
2.3
|
41.6
|
1.0
|
CD2
|
B:HIS204
|
2.4
|
41.6
|
1.0
|
OE2
|
B:GLU132
|
2.4
|
37.9
|
1.0
|
OE1
|
B:GLU132
|
2.4
|
37.9
|
1.0
|
CD
|
B:GLU132
|
2.7
|
37.9
|
1.0
|
O
|
B:GLY126
|
3.0
|
32.7
|
1.0
|
H
|
B:ARG128
|
3.5
|
33.9
|
1.0
|
CE1
|
B:HIS204
|
3.6
|
41.6
|
1.0
|
CG
|
B:HIS204
|
3.7
|
41.6
|
1.0
|
HA
|
B:ILE127
|
3.7
|
33.9
|
1.0
|
HB2
|
B:ARG128
|
3.8
|
33.9
|
1.0
|
O2D
|
B:CLA813
|
3.9
|
35.8
|
1.0
|
HED1
|
B:CLA813
|
3.9
|
35.8
|
1.0
|
HED3
|
B:CLA813
|
3.9
|
35.8
|
1.0
|
HG2
|
B:ARG128
|
4.1
|
33.9
|
1.0
|
HE1
|
B:HIS204
|
4.1
|
41.6
|
1.0
|
CED
|
B:CLA813
|
4.1
|
35.8
|
1.0
|
N
|
B:ARG128
|
4.1
|
33.9
|
1.0
|
C
|
B:GLY126
|
4.2
|
32.7
|
1.0
|
CG
|
B:GLU132
|
4.2
|
37.9
|
1.0
|
ND1
|
B:HIS204
|
4.2
|
41.6
|
1.0
|
HG3
|
B:ARG128
|
4.5
|
33.9
|
1.0
|
HG13
|
B:VAL195
|
4.5
|
33.9
|
1.0
|
CB
|
B:ARG128
|
4.5
|
33.9
|
1.0
|
CA
|
B:ILE127
|
4.5
|
33.9
|
1.0
|
HG2
|
B:GLU132
|
4.5
|
37.9
|
1.0
|
HG3
|
B:GLU132
|
4.5
|
37.9
|
1.0
|
CG
|
B:ARG128
|
4.6
|
33.9
|
1.0
|
O1D
|
B:CLA813
|
4.6
|
35.8
|
1.0
|
CGD
|
B:CLA813
|
4.6
|
35.8
|
1.0
|
HD22
|
B:ASN129
|
4.6
|
36.9
|
1.0
|
C
|
B:ILE127
|
4.7
|
33.9
|
1.0
|
HB2
|
B:ALA199
|
4.8
|
35.0
|
1.0
|
HG11
|
B:VAL195
|
4.8
|
33.9
|
1.0
|
HD21
|
B:ASN129
|
4.8
|
36.9
|
1.0
|
N
|
B:ILE127
|
4.8
|
33.9
|
1.0
|
O
|
B:VAL205
|
4.8
|
39.7
|
1.0
|
ND2
|
B:ASN129
|
4.8
|
36.9
|
1.0
|
HB2
|
B:HIS204
|
4.9
|
41.6
|
1.0
|
H
|
B:ASN129
|
4.9
|
36.9
|
1.0
|
CB
|
B:HIS204
|
4.9
|
41.6
|
1.0
|
HG12
|
B:VAL195
|
4.9
|
33.9
|
1.0
|
CA
|
B:ARG128
|
4.9
|
33.9
|
1.0
|
HB3
|
B:GLU132
|
5.0
|
37.9
|
1.0
|
CG1
|
B:VAL195
|
5.0
|
33.9
|
1.0
|
HA
|
B:HIS204
|
5.0
|
41.6
|
1.0
|
|
Calcium binding site 2 out
of 2 in 7blz
Go back to
Calcium Binding Sites List in 7blz
Calcium binding site 2 out
of 2 in the Red Alga C.Merolae Photosystem I
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Red Alga C.Merolae Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca853
b:53.6
occ:1.00
|
HA3
|
B:GLY206
|
2.1
|
40.6
|
1.0
|
C
|
B:GLY206
|
2.2
|
40.6
|
1.0
|
N
|
B:TRP207
|
2.2
|
40.8
|
1.0
|
N
|
B:ASP208
|
2.2
|
45.0
|
1.0
|
H
|
B:TRP207
|
2.4
|
40.8
|
1.0
|
CA
|
B:GLY206
|
2.5
|
40.6
|
1.0
|
HB2
|
B:ASP208
|
2.7
|
45.0
|
1.0
|
O
|
B:GLY206
|
2.8
|
40.6
|
1.0
|
H
|
B:ASN209
|
3.0
|
40.9
|
1.0
|
C
|
B:TRP207
|
3.0
|
40.8
|
1.0
|
CA
|
B:TRP207
|
3.1
|
40.8
|
1.0
|
CA
|
B:ASP208
|
3.2
|
45.0
|
1.0
|
HA2
|
B:GLY206
|
3.3
|
40.6
|
1.0
|
H
|
B:GLY206
|
3.3
|
40.6
|
1.0
|
CB
|
B:ASP208
|
3.3
|
45.0
|
1.0
|
N
|
B:GLY206
|
3.4
|
40.6
|
1.0
|
HB2
|
B:TRP207
|
3.5
|
40.8
|
1.0
|
N
|
B:ASN209
|
3.6
|
40.9
|
1.0
|
OD1
|
B:ASN209
|
3.7
|
40.9
|
1.0
|
CB
|
B:TRP207
|
3.9
|
40.8
|
1.0
|
HA
|
B:TRP207
|
3.9
|
40.8
|
1.0
|
HG32
|
B:DGD850
|
3.9
|
48.1
|
1.0
|
CG
|
B:ASP208
|
3.9
|
45.0
|
1.0
|
C
|
B:ASP208
|
4.0
|
45.0
|
1.0
|
HA
|
B:ASP208
|
4.0
|
45.0
|
1.0
|
HB3
|
B:ASP208
|
4.2
|
45.0
|
1.0
|
O
|
B:TRP207
|
4.2
|
40.8
|
1.0
|
OD1
|
B:ASP208
|
4.3
|
45.0
|
1.0
|
H
|
B:PHE210
|
4.5
|
39.9
|
1.0
|
HD1
|
B:TRP207
|
4.5
|
40.8
|
1.0
|
OBD
|
B:CLA813
|
4.6
|
35.8
|
1.0
|
OD2
|
B:ASP208
|
4.6
|
45.0
|
1.0
|
HB3
|
B:TRP207
|
4.6
|
40.8
|
1.0
|
CG
|
B:ASN209
|
4.6
|
40.9
|
1.0
|
HMD2
|
B:CLA813
|
4.7
|
35.8
|
1.0
|
CG
|
B:TRP207
|
4.7
|
40.8
|
1.0
|
C
|
B:VAL205
|
4.7
|
39.7
|
1.0
|
CD1
|
B:TRP207
|
4.9
|
40.8
|
1.0
|
CA
|
B:ASN209
|
4.9
|
40.9
|
1.0
|
HD1
|
B:DGD850
|
4.9
|
48.1
|
1.0
|
C3G
|
B:DGD850
|
5.0
|
48.1
|
1.0
|
HE1
|
B:HIS204
|
5.0
|
41.6
|
1.0
|
|
Reference:
N.Nelson,
D.Klaiman,
M.Hippler.
Red Alga C.Merolae Photosystem I To Be Published.
Page generated: Thu Jul 18 23:19:48 2024
|