Atomistry » Calcium » PDB 7c4h-7cgy » 7c7d
Atomistry »
  Calcium »
    PDB 7c4h-7cgy »
      7c7d »

Calcium in PDB 7c7d: Crystal Structure of the Catalytic Unit of Thermostable GH87 Alpha-1, 3-Glucanase From Streptomyces Thermodiastaticus Strain HF3-3

Enzymatic activity of Crystal Structure of the Catalytic Unit of Thermostable GH87 Alpha-1, 3-Glucanase From Streptomyces Thermodiastaticus Strain HF3-3

All present enzymatic activity of Crystal Structure of the Catalytic Unit of Thermostable GH87 Alpha-1, 3-Glucanase From Streptomyces Thermodiastaticus Strain HF3-3:
3.2.1.59;

Protein crystallography data

The structure of Crystal Structure of the Catalytic Unit of Thermostable GH87 Alpha-1, 3-Glucanase From Streptomyces Thermodiastaticus Strain HF3-3, PDB code: 7c7d was solved by T.Itoh, N.Panti, Y.Toyotake, J.Hayashi, W.Suyotha, S.Yano, M.Wakayama, T.Hibi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.21 / 1.16
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.508, 91.329, 164.447, 90.00, 90.00, 90.00
R / Rfree (%) 13.5 / 15.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Catalytic Unit of Thermostable GH87 Alpha-1, 3-Glucanase From Streptomyces Thermodiastaticus Strain HF3-3 (pdb code 7c7d). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of the Catalytic Unit of Thermostable GH87 Alpha-1, 3-Glucanase From Streptomyces Thermodiastaticus Strain HF3-3, PDB code: 7c7d:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 7c7d

Go back to Calcium Binding Sites List in 7c7d
Calcium binding site 1 out of 2 in the Crystal Structure of the Catalytic Unit of Thermostable GH87 Alpha-1, 3-Glucanase From Streptomyces Thermodiastaticus Strain HF3-3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Catalytic Unit of Thermostable GH87 Alpha-1, 3-Glucanase From Streptomyces Thermodiastaticus Strain HF3-3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca701

b:11.8
occ:1.00
OD1 A:ASP191 2.3 12.6 1.0
OE2 A:GLU63 2.3 12.9 1.0
O A:GLN91 2.4 12.0 1.0
O A:SER88 2.4 11.5 1.0
OE1 A:GLU65 2.5 13.5 1.0
OE2 A:GLU65 2.5 13.6 1.0
O A:ASP191 2.6 12.7 1.0
CD A:GLU65 2.8 13.3 1.0
CD A:GLU63 3.4 14.0 1.0
C A:ASP191 3.5 11.9 1.0
C A:SER88 3.5 11.7 1.0
CG A:ASP191 3.5 11.6 1.0
C A:GLN91 3.5 11.6 1.0
CA A:ASP191 3.9 11.8 1.0
CB A:SER88 4.0 12.2 1.0
CA A:SER88 4.1 11.3 1.0
CB A:GLU63 4.2 13.3 1.0
N A:SER88 4.2 11.0 1.0
OE1 A:GLU63 4.2 16.0 1.0
CB A:ASP191 4.3 11.8 1.0
CG A:GLU63 4.3 13.2 1.0
N A:ALA92 4.4 13.3 1.0
CG A:GLU65 4.4 14.6 1.0
CA A:ALA92 4.4 13.6 1.0
N A:GLN91 4.4 11.9 1.0
OD2 A:ASP191 4.4 12.3 1.0
CA A:GLN91 4.4 12.8 1.0
N A:ALA64 4.5 13.6 1.0
N A:VAL192 4.5 12.6 1.0
CB A:ALA87 4.5 12.2 1.0
N A:GLY89 4.5 10.8 1.0
CA A:GLU63 4.6 13.7 1.0
CB A:VAL192 4.6 12.8 1.0
C A:ALA87 4.7 11.2 1.0
CB A:GLN91 4.8 13.9 1.0
OG A:SER88 4.8 12.8 1.0
CA A:GLY89 4.8 13.1 1.0
CB A:ALA92 4.9 13.4 1.0
O A:HOH939 4.9 20.8 1.0
CA A:VAL192 4.9 12.7 1.0
C A:GLU63 5.0 13.8 1.0

Calcium binding site 2 out of 2 in 7c7d

Go back to Calcium Binding Sites List in 7c7d
Calcium binding site 2 out of 2 in the Crystal Structure of the Catalytic Unit of Thermostable GH87 Alpha-1, 3-Glucanase From Streptomyces Thermodiastaticus Strain HF3-3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Catalytic Unit of Thermostable GH87 Alpha-1, 3-Glucanase From Streptomyces Thermodiastaticus Strain HF3-3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca802

b:12.2
occ:1.00
OD1 B:ASP191 2.3 13.0 1.0
OE2 B:GLU63 2.3 13.2 1.0
O B:GLN91 2.4 13.2 1.0
O B:SER88 2.4 12.4 1.0
OE1 B:GLU65 2.5 14.1 1.0
OE2 B:GLU65 2.5 14.5 1.0
O B:ASP191 2.6 12.7 1.0
CD B:GLU65 2.8 13.8 1.0
CD B:GLU63 3.4 14.4 1.0
C B:ASP191 3.5 11.8 1.0
C B:SER88 3.5 11.5 1.0
CG B:ASP191 3.5 12.2 1.0
C B:GLN91 3.5 12.7 1.0
CA B:ASP191 3.9 12.1 1.0
CB B:SER88 4.1 12.9 1.0
CA B:SER88 4.1 12.3 1.0
CB B:GLU63 4.1 13.9 1.0
N B:SER88 4.2 12.1 1.0
OE1 B:GLU63 4.2 16.1 1.0
CG B:GLU63 4.3 13.6 1.0
CB B:ASP191 4.3 12.6 1.0
N B:ALA92 4.4 14.1 1.0
CG B:GLU65 4.4 15.4 1.0
CA B:ALA92 4.4 13.7 1.0
N B:GLN91 4.4 12.9 1.0
OD2 B:ASP191 4.4 12.7 1.0
CA B:GLN91 4.5 13.4 1.0
CB B:ALA87 4.5 12.8 1.0
N B:ALA64 4.5 13.0 1.0
N B:VAL192 4.5 12.3 1.0
N B:GLY89 4.6 12.6 1.0
CA B:GLU63 4.6 13.5 1.0
CB B:VAL192 4.6 12.8 1.0
C B:ALA87 4.7 11.2 1.0
OG B:SER88 4.8 13.2 1.0
CB B:GLN91 4.8 16.0 1.0
CB B:ALA92 4.8 15.3 1.0
CA B:GLY89 4.8 13.4 1.0
O B:HOH978 4.9 29.7 1.0
CA B:VAL192 4.9 12.4 1.0
C B:GLU63 5.0 13.2 1.0

Reference:

T.Itoh, N.Panti, J.Hayashi, Y.Toyotake, D.Matsui, S.Yano, M.Wakayama, T.Hibi. Crystal Structure of the Catalytic Unit of Thermostable GH87 Alpha-1,3-Glucanase From Streptomyces Thermodiastaticus Strain HF3-3. Biochem.Biophys.Res.Commun. 2020.
ISSN: ESSN 1090-2104
PubMed: 33041007
DOI: 10.1016/J.BBRC.2020.09.133
Page generated: Thu Jul 18 23:28:54 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy