Calcium in PDB 7c7r: Biofilm Associated Protein - B Domain
Protein crystallography data
The structure of Biofilm Associated Protein - B Domain, PDB code: 7c7r
was solved by
J.F.Ma,
Z.H.Xu,
Y.K.Zhang,
X.Cheng,
S.L.Fan,
J.W.Wang,
X.Y.Fang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.10 /
3.07
|
|
Space group
|
P 41 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
171.171,
171.171,
102.503,
90,
90,
90
|
|
R / Rfree (%)
|
19.2 /
22.4
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Biofilm Associated Protein - B Domain
(pdb code 7c7r). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
Biofilm Associated Protein - B Domain, PDB code: 7c7r:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 7c7r
Go back to
Calcium Binding Sites List in 7c7r
Calcium binding site 1 out
of 10 in the Biofilm Associated Protein - B Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Biofilm Associated Protein - B Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca801
b:65.7
occ:1.00
|
OD1
|
B:ASP614
|
2.4
|
63.7
|
1.0
|
|
OD1
|
B:ASN656
|
2.5
|
62.6
|
1.0
|
|
O
|
B:TYR615
|
2.7
|
58.3
|
1.0
|
|
OE1
|
B:GLU661
|
2.7
|
86.1
|
1.0
|
|
CG
|
B:ASP614
|
3.4
|
62.3
|
1.0
|
|
OD2
|
B:ASP614
|
3.6
|
71.7
|
1.0
|
|
CG
|
B:ASN656
|
3.7
|
61.5
|
1.0
|
|
C
|
B:TYR615
|
3.7
|
34.0
|
1.0
|
|
CD
|
B:GLU661
|
3.7
|
85.3
|
1.0
|
|
OE2
|
B:GLU661
|
4.1
|
89.9
|
1.0
|
|
OE2
|
B:GLU654
|
4.1
|
84.1
|
1.0
|
|
N
|
B:TYR615
|
4.3
|
61.0
|
1.0
|
|
CB
|
B:ASN656
|
4.4
|
42.7
|
1.0
|
|
CA
|
B:TYR615
|
4.5
|
34.0
|
1.0
|
|
N
|
B:LYS616
|
4.6
|
28.1
|
1.0
|
|
CA
|
B:LYS616
|
4.6
|
31.9
|
1.0
|
|
ND2
|
B:ASN656
|
4.7
|
68.9
|
1.0
|
|
CG
|
B:GLU654
|
4.7
|
74.5
|
1.0
|
|
CD
|
B:GLU654
|
4.8
|
86.2
|
1.0
|
|
CB
|
B:ASP614
|
4.8
|
52.5
|
1.0
|
|
N
|
B:GLY617
|
4.8
|
42.8
|
1.0
|
|
CB
|
B:TYR615
|
4.8
|
36.9
|
1.0
|
|
CA
|
B:ASN656
|
4.9
|
47.4
|
1.0
|
|
C
|
B:ASP614
|
4.9
|
60.0
|
1.0
|
|
CD1
|
B:LEU659
|
4.9
|
55.6
|
1.0
|
|
Calcium binding site 2 out
of 10 in 7c7r
Go back to
Calcium Binding Sites List in 7c7r
Calcium binding site 2 out
of 10 in the Biofilm Associated Protein - B Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Biofilm Associated Protein - B Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca802
b:76.6
occ:1.00
|
O
|
B:LEU735
|
2.4
|
82.3
|
1.0
|
|
OD1
|
B:ASP731
|
2.4
|
76.8
|
1.0
|
|
OE2
|
B:GLU740
|
2.4
|
80.1
|
1.0
|
|
OD1
|
B:ASP733
|
2.4
|
81.9
|
1.0
|
|
O
|
B:HOH901
|
2.5
|
115.4
|
1.0
|
|
OD1
|
B:ASP729
|
2.6
|
72.1
|
1.0
|
|
CG
|
B:ASP733
|
3.2
|
72.6
|
1.0
|
|
CG
|
B:ASP731
|
3.3
|
66.9
|
1.0
|
|
OD2
|
B:ASP733
|
3.5
|
66.5
|
1.0
|
|
C
|
B:LEU735
|
3.5
|
78.8
|
1.0
|
|
CD
|
B:GLU740
|
3.5
|
78.0
|
1.0
|
|
OD2
|
B:ASP731
|
3.6
|
71.2
|
1.0
|
|
CG
|
B:ASP729
|
3.8
|
80.2
|
1.0
|
|
CA
|
B:LEU735
|
4.1
|
79.2
|
1.0
|
|
CB
|
B:LEU735
|
4.2
|
69.8
|
1.0
|
|
CG
|
B:GLU740
|
4.2
|
69.6
|
1.0
|
|
N
|
B:LEU735
|
4.2
|
82.5
|
1.0
|
|
N
|
B:ASP733
|
4.2
|
79.4
|
1.0
|
|
OD2
|
B:ASP737
|
4.3
|
106.0
|
1.0
|
|
CA
|
B:CA803
|
4.3
|
76.3
|
1.0
|
|
C
|
B:LEU736
|
4.4
|
66.6
|
1.0
|
|
CA
|
B:ASP729
|
4.4
|
73.2
|
1.0
|
|
O
|
B:ALA748
|
4.5
|
83.3
|
1.0
|
|
CB
|
B:ASP733
|
4.5
|
72.1
|
1.0
|
|
N
|
B:ASP731
|
4.5
|
82.4
|
1.0
|
|
O
|
B:LEU736
|
4.5
|
55.3
|
1.0
|
|
OD2
|
B:ASP729
|
4.5
|
78.4
|
1.0
|
|
N
|
B:LEU736
|
4.5
|
82.0
|
1.0
|
|
N
|
B:ASP737
|
4.5
|
71.5
|
1.0
|
|
OE1
|
B:GLU740
|
4.6
|
74.1
|
1.0
|
|
N
|
B:LYS732
|
4.6
|
80.9
|
1.0
|
|
N
|
B:TYR730
|
4.6
|
82.5
|
1.0
|
|
C
|
B:ASP729
|
4.6
|
77.6
|
1.0
|
|
CB
|
B:ASP731
|
4.7
|
43.6
|
1.0
|
|
CB
|
B:ASP729
|
4.7
|
81.7
|
1.0
|
|
CA
|
B:LEU736
|
4.7
|
74.4
|
1.0
|
|
CA
|
B:ASP733
|
4.8
|
81.2
|
1.0
|
|
CA
|
B:ASP737
|
4.9
|
62.8
|
1.0
|
|
CA
|
B:ASP731
|
4.9
|
71.9
|
1.0
|
|
C
|
B:ASP731
|
5.0
|
86.9
|
1.0
|
|
CG
|
B:ASP737
|
5.0
|
93.6
|
1.0
|
|
Calcium binding site 3 out
of 10 in 7c7r
Go back to
Calcium Binding Sites List in 7c7r
Calcium binding site 3 out
of 10 in the Biofilm Associated Protein - B Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Biofilm Associated Protein - B Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca803
b:76.3
occ:1.00
|
OE1
|
B:GLU740
|
2.4
|
74.1
|
1.0
|
|
O
|
B:ASP747
|
2.4
|
70.4
|
1.0
|
|
OD2
|
B:ASP731
|
2.4
|
71.2
|
1.0
|
|
O
|
B:ASN750
|
2.5
|
94.5
|
1.0
|
|
OD1
|
B:ASP760
|
2.5
|
108.9
|
1.0
|
|
OD2
|
B:ASP733
|
2.6
|
66.5
|
1.0
|
|
OE2
|
B:GLU740
|
2.7
|
80.1
|
1.0
|
|
CD
|
B:GLU740
|
2.9
|
78.0
|
1.0
|
|
CG
|
B:ASP760
|
3.5
|
103.8
|
1.0
|
|
C
|
B:ASN750
|
3.6
|
97.1
|
1.0
|
|
CG
|
B:ASP731
|
3.6
|
66.9
|
1.0
|
|
C
|
B:ASP747
|
3.6
|
68.7
|
1.0
|
|
CG
|
B:ASP733
|
3.8
|
72.6
|
1.0
|
|
CB
|
B:ASP760
|
3.8
|
93.0
|
1.0
|
|
OD1
|
B:ASP731
|
4.2
|
76.8
|
1.0
|
|
N
|
B:ASN750
|
4.2
|
104.6
|
1.0
|
|
OG1
|
B:THR753
|
4.3
|
69.6
|
1.0
|
|
CA
|
B:CA802
|
4.3
|
76.6
|
1.0
|
|
CA
|
B:ALA748
|
4.3
|
78.1
|
1.0
|
|
CG
|
B:GLU740
|
4.4
|
69.6
|
1.0
|
|
OD1
|
B:ASP733
|
4.4
|
81.9
|
1.0
|
|
N
|
B:ALA748
|
4.4
|
76.1
|
1.0
|
|
CA
|
B:ASN750
|
4.4
|
103.1
|
1.0
|
|
C
|
B:ALA748
|
4.5
|
85.5
|
1.0
|
|
N
|
B:GLU751
|
4.5
|
91.6
|
1.0
|
|
OG
|
B:SER746
|
4.5
|
69.5
|
1.0
|
|
CA
|
B:GLU751
|
4.6
|
86.9
|
1.0
|
|
N
|
B:ASP747
|
4.6
|
69.4
|
1.0
|
|
CB
|
B:SER746
|
4.6
|
78.5
|
1.0
|
|
CA
|
B:ASP747
|
4.6
|
63.8
|
1.0
|
|
OD2
|
B:ASP760
|
4.6
|
107.2
|
1.0
|
|
O
|
B:ALA748
|
4.7
|
83.3
|
1.0
|
|
O
|
B:HOH901
|
4.7
|
115.4
|
1.0
|
|
CB
|
B:ASP731
|
4.8
|
43.6
|
1.0
|
|
CB
|
B:ASP733
|
4.8
|
72.1
|
1.0
|
|
C
|
B:GLU751
|
4.8
|
92.3
|
1.0
|
|
N
|
B:GLU749
|
4.9
|
96.7
|
1.0
|
|
CB
|
B:ASN750
|
4.9
|
103.7
|
1.0
|
|
C
|
B:SER746
|
5.0
|
80.8
|
1.0
|
|
Calcium binding site 4 out
of 10 in 7c7r
Go back to
Calcium Binding Sites List in 7c7r
Calcium binding site 4 out
of 10 in the Biofilm Associated Protein - B Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Biofilm Associated Protein - B Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca804
b:89.0
occ:1.00
|
OD1
|
B:ASP752
|
2.3
|
76.5
|
1.0
|
|
OD1
|
B:ASP754
|
2.4
|
125.4
|
1.0
|
|
O
|
B:LYS758
|
2.4
|
84.0
|
1.0
|
|
OD2
|
B:ASP756
|
2.5
|
101.5
|
1.0
|
|
OE1
|
B:GLU763
|
2.5
|
87.0
|
1.0
|
|
OD2
|
B:ASP754
|
2.8
|
130.3
|
1.0
|
|
CG
|
B:ASP754
|
2.9
|
120.5
|
1.0
|
|
CG
|
B:ASP756
|
3.5
|
102.6
|
1.0
|
|
CG
|
B:ASP752
|
3.5
|
89.4
|
1.0
|
|
C
|
B:LYS758
|
3.6
|
88.7
|
1.0
|
|
CD
|
B:GLU763
|
3.6
|
88.8
|
1.0
|
|
CA
|
B:CA805
|
3.8
|
88.6
|
1.0
|
|
CB
|
B:LYS758
|
3.9
|
100.0
|
1.0
|
|
OD1
|
B:ASP756
|
4.1
|
105.5
|
1.0
|
|
OE2
|
B:GLU763
|
4.1
|
94.3
|
1.0
|
|
CA
|
B:LYS758
|
4.1
|
90.9
|
1.0
|
|
N
|
B:LYS758
|
4.1
|
83.3
|
1.0
|
|
OD2
|
B:ASP760
|
4.2
|
107.2
|
1.0
|
|
OD2
|
B:ASP752
|
4.3
|
93.4
|
1.0
|
|
CB
|
B:ASP754
|
4.3
|
105.3
|
1.0
|
|
N
|
B:ASP754
|
4.3
|
95.7
|
1.0
|
|
N
|
B:ASP756
|
4.4
|
98.0
|
1.0
|
|
CA
|
B:ASP752
|
4.5
|
86.9
|
1.0
|
|
N
|
B:GLY755
|
4.5
|
80.6
|
1.0
|
|
O
|
B:PRO771
|
4.6
|
91.9
|
1.0
|
|
CB
|
B:ASP752
|
4.6
|
90.4
|
1.0
|
|
N
|
B:THR753
|
4.6
|
72.5
|
1.0
|
|
CB
|
B:ASP756
|
4.7
|
98.6
|
1.0
|
|
CA
|
B:PRO771
|
4.7
|
95.7
|
1.0
|
|
N
|
B:ASN759
|
4.7
|
91.7
|
1.0
|
|
CA
|
B:ASP754
|
4.8
|
99.8
|
1.0
|
|
O
|
B:ASN759
|
4.8
|
87.5
|
1.0
|
|
C
|
B:ASN759
|
4.8
|
90.0
|
1.0
|
|
C
|
B:ASP752
|
4.8
|
83.3
|
1.0
|
|
CG
|
B:GLU763
|
4.8
|
84.0
|
1.0
|
|
C
|
B:PRO771
|
4.8
|
93.5
|
1.0
|
|
CA
|
B:ASP756
|
4.9
|
92.1
|
1.0
|
|
C
|
B:ASP754
|
4.9
|
93.6
|
1.0
|
|
CB
|
B:GLU763
|
5.0
|
75.9
|
1.0
|
|
CG
|
B:LYS758
|
5.0
|
108.1
|
1.0
|
|
Calcium binding site 5 out
of 10 in 7c7r
Go back to
Calcium Binding Sites List in 7c7r
Calcium binding site 5 out
of 10 in the Biofilm Associated Protein - B Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Biofilm Associated Protein - B Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca805
b:88.6
occ:1.00
|
O
|
B:VAL773
|
2.3
|
114.2
|
1.0
|
|
OE2
|
B:GLU763
|
2.3
|
94.3
|
1.0
|
|
O
|
B:SER770
|
2.4
|
84.7
|
1.0
|
|
OD2
|
B:ASP754
|
2.6
|
130.3
|
1.0
|
|
CD
|
B:GLU763
|
3.0
|
88.8
|
1.0
|
|
CG
|
B:ASP754
|
3.2
|
120.5
|
1.0
|
|
OE1
|
B:GLU763
|
3.3
|
87.0
|
1.0
|
|
OD1
|
B:ASP756
|
3.4
|
105.5
|
1.0
|
|
C
|
B:VAL773
|
3.5
|
109.8
|
1.0
|
|
OD1
|
B:ASP754
|
3.5
|
125.4
|
1.0
|
|
C
|
B:SER770
|
3.6
|
91.4
|
1.0
|
|
N
|
B:VAL773
|
3.7
|
112.4
|
1.0
|
|
CA
|
B:PRO771
|
3.8
|
95.7
|
1.0
|
|
CA
|
B:CA804
|
3.8
|
89.0
|
1.0
|
|
CG
|
B:ASP756
|
3.9
|
102.6
|
1.0
|
|
C
|
B:PRO771
|
4.0
|
93.5
|
1.0
|
|
OD2
|
B:ASP756
|
4.1
|
101.5
|
1.0
|
|
N
|
B:LEU772
|
4.1
|
97.2
|
1.0
|
|
CG
|
B:GLU763
|
4.1
|
84.0
|
1.0
|
|
N
|
B:PRO771
|
4.2
|
100.8
|
1.0
|
|
CA
|
B:VAL773
|
4.2
|
101.7
|
1.0
|
|
CB
|
B:ASP754
|
4.3
|
105.3
|
1.0
|
|
N
|
B:GLY774
|
4.5
|
111.2
|
1.0
|
|
O
|
B:PRO771
|
4.7
|
91.9
|
1.0
|
|
C
|
B:LEU772
|
4.7
|
113.6
|
1.0
|
|
CA
|
B:SER770
|
4.7
|
85.1
|
1.0
|
|
CA
|
B:GLY774
|
4.8
|
117.4
|
1.0
|
|
CB
|
B:VAL773
|
4.8
|
86.8
|
1.0
|
|
N
|
B:SER770
|
4.9
|
90.1
|
1.0
|
|
CA
|
B:LEU772
|
4.9
|
102.3
|
1.0
|
|
OG1
|
B:THR769
|
5.0
|
111.8
|
1.0
|
|
Calcium binding site 6 out
of 10 in 7c7r
Go back to
Calcium Binding Sites List in 7c7r
Calcium binding site 6 out
of 10 in the Biofilm Associated Protein - B Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Biofilm Associated Protein - B Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca801
b:56.7
occ:1.00
|
OD1
|
A:ASN656
|
2.3
|
71.2
|
1.0
|
|
OD1
|
A:ASP614
|
2.4
|
63.6
|
1.0
|
|
O
|
A:TYR615
|
2.5
|
56.0
|
1.0
|
|
OE1
|
A:GLU661
|
2.6
|
82.5
|
1.0
|
|
CG
|
A:ASP614
|
3.4
|
50.3
|
1.0
|
|
CG
|
A:ASN656
|
3.5
|
76.1
|
1.0
|
|
C
|
A:TYR615
|
3.6
|
47.7
|
1.0
|
|
OD2
|
A:ASP614
|
3.7
|
64.5
|
1.0
|
|
CD
|
A:GLU661
|
3.7
|
80.3
|
1.0
|
|
OE2
|
A:GLU661
|
4.0
|
86.2
|
1.0
|
|
N
|
A:TYR615
|
4.1
|
47.7
|
1.0
|
|
CB
|
A:ASN656
|
4.3
|
66.7
|
1.0
|
|
CA
|
A:TYR615
|
4.4
|
44.8
|
1.0
|
|
OE1
|
A:GLU654
|
4.4
|
97.8
|
1.0
|
|
N
|
A:LYS616
|
4.5
|
39.0
|
1.0
|
|
ND2
|
A:ASN656
|
4.5
|
79.1
|
1.0
|
|
CA
|
A:LYS616
|
4.5
|
36.8
|
1.0
|
|
CB
|
A:TYR615
|
4.7
|
53.1
|
1.0
|
|
CG
|
A:GLU654
|
4.7
|
88.8
|
1.0
|
|
CD1
|
A:LEU659
|
4.7
|
59.9
|
1.0
|
|
CB
|
A:ASP614
|
4.8
|
40.8
|
1.0
|
|
N
|
A:GLY617
|
4.8
|
47.1
|
1.0
|
|
C
|
A:ASP614
|
4.8
|
47.8
|
1.0
|
|
CA
|
A:ASN656
|
4.8
|
59.7
|
1.0
|
|
CD
|
A:GLU654
|
5.0
|
94.1
|
1.0
|
|
CG
|
A:GLU661
|
5.0
|
68.8
|
1.0
|
|
Calcium binding site 7 out
of 10 in 7c7r
Go back to
Calcium Binding Sites List in 7c7r
Calcium binding site 7 out
of 10 in the Biofilm Associated Protein - B Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Biofilm Associated Protein - B Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca802
b:50.7
occ:1.00
|
OD1
|
A:ASP731
|
2.3
|
71.5
|
1.0
|
|
OD1
|
A:ASP733
|
2.3
|
79.7
|
1.0
|
|
OE2
|
A:GLU740
|
2.4
|
85.0
|
1.0
|
|
O
|
A:LEU735
|
2.4
|
44.5
|
1.0
|
|
O
|
A:HOH901
|
2.6
|
89.7
|
1.0
|
|
OD1
|
A:ASP729
|
2.6
|
49.5
|
1.0
|
|
CG
|
A:ASP733
|
3.1
|
79.2
|
1.0
|
|
CG
|
A:ASP731
|
3.2
|
68.0
|
1.0
|
|
OD2
|
A:ASP733
|
3.3
|
80.3
|
1.0
|
|
OD2
|
A:ASP731
|
3.4
|
67.3
|
1.0
|
|
C
|
A:LEU735
|
3.5
|
52.9
|
1.0
|
|
CD
|
A:GLU740
|
3.5
|
72.0
|
1.0
|
|
CG
|
A:ASP729
|
3.7
|
58.6
|
1.0
|
|
CA
|
A:CA803
|
4.1
|
62.6
|
1.0
|
|
CB
|
A:LEU735
|
4.1
|
43.6
|
1.0
|
|
N
|
A:LEU735
|
4.1
|
53.2
|
1.0
|
|
CA
|
A:LEU735
|
4.1
|
51.6
|
1.0
|
|
CG
|
A:GLU740
|
4.1
|
56.8
|
1.0
|
|
OD1
|
A:ASP737
|
4.1
|
82.1
|
1.0
|
|
N
|
A:ASP733
|
4.2
|
71.6
|
1.0
|
|
O
|
A:ALA748
|
4.3
|
76.2
|
1.0
|
|
CB
|
A:ASP733
|
4.4
|
73.0
|
1.0
|
|
OD2
|
A:ASP729
|
4.4
|
56.3
|
1.0
|
|
CA
|
A:ASP729
|
4.5
|
56.0
|
1.0
|
|
N
|
A:ASP731
|
4.5
|
64.0
|
1.0
|
|
C
|
A:LEU736
|
4.5
|
55.8
|
1.0
|
|
OE1
|
A:GLU740
|
4.5
|
79.0
|
1.0
|
|
N
|
A:LEU736
|
4.6
|
46.9
|
1.0
|
|
O
|
A:LEU736
|
4.6
|
61.9
|
1.0
|
|
CB
|
A:ASP731
|
4.6
|
54.7
|
1.0
|
|
CB
|
A:ASP729
|
4.6
|
61.8
|
1.0
|
|
N
|
A:LYS732
|
4.6
|
76.2
|
1.0
|
|
C
|
A:ASP729
|
4.7
|
60.3
|
1.0
|
|
N
|
A:TYR730
|
4.7
|
61.5
|
1.0
|
|
CA
|
A:ASP733
|
4.7
|
68.9
|
1.0
|
|
N
|
A:ASP737
|
4.8
|
69.8
|
1.0
|
|
CA
|
A:LEU736
|
4.8
|
40.8
|
1.0
|
|
CA
|
A:ASP731
|
4.9
|
60.1
|
1.0
|
|
CA
|
A:ALA748
|
4.9
|
63.2
|
1.0
|
|
C
|
A:ASP733
|
4.9
|
67.8
|
1.0
|
|
C
|
A:ALA748
|
5.0
|
72.7
|
1.0
|
|
N
|
A:GLY734
|
5.0
|
62.4
|
1.0
|
|
C
|
A:ASP731
|
5.0
|
72.7
|
1.0
|
|
Calcium binding site 8 out
of 10 in 7c7r
Go back to
Calcium Binding Sites List in 7c7r
Calcium binding site 8 out
of 10 in the Biofilm Associated Protein - B Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Biofilm Associated Protein - B Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca803
b:62.6
occ:1.00
|
OD2
|
A:ASP733
|
2.4
|
80.3
|
1.0
|
|
OD2
|
A:ASP731
|
2.4
|
67.3
|
1.0
|
|
O
|
A:ASP747
|
2.4
|
74.9
|
1.0
|
|
O
|
A:ASN750
|
2.5
|
80.3
|
1.0
|
|
OE1
|
A:GLU740
|
2.5
|
79.0
|
1.0
|
|
OE2
|
A:GLU740
|
2.5
|
85.0
|
1.0
|
|
OD2
|
A:ASP760
|
2.5
|
56.9
|
1.0
|
|
CD
|
A:GLU740
|
2.8
|
72.0
|
1.0
|
|
CG
|
A:ASP731
|
3.5
|
68.0
|
1.0
|
|
CG
|
A:ASP760
|
3.5
|
57.1
|
1.0
|
|
CG
|
A:ASP733
|
3.6
|
79.2
|
1.0
|
|
C
|
A:ASN750
|
3.6
|
68.1
|
1.0
|
|
C
|
A:ASP747
|
3.6
|
63.4
|
1.0
|
|
CB
|
A:ASP760
|
3.9
|
43.8
|
1.0
|
|
OD1
|
A:ASP731
|
4.1
|
71.5
|
1.0
|
|
CA
|
A:CA802
|
4.1
|
50.7
|
1.0
|
|
N
|
A:ASN750
|
4.1
|
72.9
|
1.0
|
|
OD1
|
A:ASP733
|
4.2
|
79.7
|
1.0
|
|
CA
|
A:ALA748
|
4.2
|
63.2
|
1.0
|
|
CG
|
A:GLU740
|
4.3
|
56.8
|
1.0
|
|
C
|
A:ALA748
|
4.4
|
72.7
|
1.0
|
|
N
|
A:ALA748
|
4.4
|
64.1
|
1.0
|
|
CA
|
A:ASN750
|
4.4
|
58.4
|
1.0
|
|
CG2
|
A:THR753
|
4.4
|
31.1
|
1.0
|
|
N
|
A:GLU751
|
4.5
|
77.7
|
1.0
|
|
O
|
A:ALA748
|
4.6
|
76.2
|
1.0
|
|
OD1
|
A:ASP760
|
4.6
|
53.1
|
1.0
|
|
CA
|
A:GLU751
|
4.6
|
83.8
|
1.0
|
|
CB
|
A:ASP733
|
4.6
|
73.0
|
1.0
|
|
N
|
A:ASP747
|
4.7
|
65.8
|
1.0
|
|
CA
|
A:ASP747
|
4.7
|
63.6
|
1.0
|
|
CB
|
A:ASP731
|
4.7
|
54.7
|
1.0
|
|
OG
|
A:SER746
|
4.7
|
65.1
|
1.0
|
|
CB
|
A:SER746
|
4.8
|
62.6
|
1.0
|
|
O
|
A:HOH901
|
4.8
|
89.7
|
1.0
|
|
N
|
A:GLU749
|
4.8
|
72.1
|
1.0
|
|
C
|
A:GLU751
|
4.9
|
87.5
|
1.0
|
|
CB
|
A:ASN750
|
4.9
|
70.3
|
1.0
|
|
Calcium binding site 9 out
of 10 in 7c7r
Go back to
Calcium Binding Sites List in 7c7r
Calcium binding site 9 out
of 10 in the Biofilm Associated Protein - B Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Biofilm Associated Protein - B Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca804
b:63.3
occ:1.00
|
OD1
|
A:ASP752
|
2.3
|
81.1
|
1.0
|
|
OD2
|
A:ASP756
|
2.3
|
64.0
|
1.0
|
|
O
|
A:LYS758
|
2.3
|
74.2
|
1.0
|
|
OE2
|
A:GLU763
|
2.4
|
73.0
|
1.0
|
|
OD1
|
A:ASP754
|
2.4
|
77.9
|
1.0
|
|
O
|
A:HOH903
|
2.6
|
69.8
|
1.0
|
|
CG
|
A:ASP754
|
3.1
|
69.5
|
1.0
|
|
OD2
|
A:ASP754
|
3.2
|
67.8
|
1.0
|
|
CG
|
A:ASP756
|
3.3
|
66.9
|
1.0
|
|
CD
|
A:GLU763
|
3.4
|
67.1
|
1.0
|
|
CG
|
A:ASP752
|
3.5
|
81.7
|
1.0
|
|
C
|
A:LYS758
|
3.5
|
64.1
|
1.0
|
|
OD1
|
A:ASP756
|
3.7
|
61.5
|
1.0
|
|
CG
|
A:GLU763
|
3.9
|
53.8
|
1.0
|
|
CA
|
A:CA805
|
4.0
|
52.1
|
1.0
|
|
N
|
A:LYS758
|
4.1
|
62.7
|
1.0
|
|
OD2
|
A:ASP752
|
4.1
|
85.2
|
1.0
|
|
CA
|
A:LYS758
|
4.2
|
58.3
|
1.0
|
|
OD1
|
A:ASP760
|
4.2
|
53.1
|
1.0
|
|
CB
|
A:LYS758
|
4.2
|
63.8
|
1.0
|
|
N
|
A:ASP756
|
4.3
|
56.8
|
1.0
|
|
CA
|
A:ASP752
|
4.5
|
72.0
|
1.0
|
|
O
|
A:PRO771
|
4.5
|
77.8
|
1.0
|
|
CB
|
A:ASP752
|
4.5
|
78.0
|
1.0
|
|
OE1
|
A:GLU763
|
4.5
|
81.9
|
1.0
|
|
N
|
A:ASP754
|
4.5
|
52.3
|
1.0
|
|
CB
|
A:ASP756
|
4.5
|
72.4
|
1.0
|
|
CB
|
A:ASP754
|
4.6
|
68.3
|
1.0
|
|
N
|
A:ASN759
|
4.6
|
67.2
|
1.0
|
|
N
|
A:GLY755
|
4.6
|
59.5
|
1.0
|
|
C
|
A:ASN759
|
4.6
|
70.6
|
1.0
|
|
O
|
A:ASN759
|
4.7
|
79.1
|
1.0
|
|
N
|
A:THR753
|
4.7
|
54.7
|
1.0
|
|
CA
|
A:PRO771
|
4.8
|
59.1
|
1.0
|
|
C
|
A:ASP752
|
4.8
|
69.2
|
1.0
|
|
CA
|
A:ASP756
|
4.8
|
66.2
|
1.0
|
|
CA
|
A:ASN759
|
4.9
|
74.3
|
1.0
|
|
C
|
A:PRO771
|
4.9
|
63.4
|
1.0
|
|
CA
|
A:ASP754
|
4.9
|
65.0
|
1.0
|
|
N
|
A:ASP760
|
5.0
|
64.3
|
1.0
|
|
C
|
A:ASP756
|
5.0
|
70.3
|
1.0
|
|
N
|
A:GLY757
|
5.0
|
65.6
|
1.0
|
|
Calcium binding site 10 out
of 10 in 7c7r
Go back to
Calcium Binding Sites List in 7c7r
Calcium binding site 10 out
of 10 in the Biofilm Associated Protein - B Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Biofilm Associated Protein - B Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca805
b:52.1
occ:1.00
|
O
|
A:VAL773
|
2.4
|
79.0
|
1.0
|
|
OE2
|
A:GLU763
|
2.4
|
73.0
|
1.0
|
|
OD2
|
A:ASP754
|
2.5
|
67.8
|
1.0
|
|
O
|
A:SER770
|
2.5
|
68.6
|
1.0
|
|
OE1
|
A:GLU763
|
2.6
|
81.9
|
1.0
|
|
OD1
|
A:ASP756
|
2.7
|
61.5
|
1.0
|
|
CD
|
A:GLU763
|
2.9
|
67.1
|
1.0
|
|
C
|
A:VAL773
|
3.5
|
77.6
|
1.0
|
|
CG
|
A:ASP754
|
3.5
|
69.5
|
1.0
|
|
CG
|
A:ASP756
|
3.6
|
66.9
|
1.0
|
|
C
|
A:SER770
|
3.7
|
64.5
|
1.0
|
|
N
|
A:VAL773
|
4.0
|
83.2
|
1.0
|
|
CA
|
A:PRO771
|
4.0
|
59.1
|
1.0
|
|
OD1
|
A:ASP754
|
4.0
|
77.9
|
1.0
|
|
CA
|
A:CA804
|
4.0
|
63.3
|
1.0
|
|
OD2
|
A:ASP756
|
4.0
|
64.0
|
1.0
|
|
NZ
|
A:LYS758
|
4.1
|
81.6
|
1.0
|
|
C
|
A:PRO771
|
4.2
|
63.4
|
1.0
|
|
N
|
A:LEU772
|
4.3
|
70.7
|
1.0
|
|
N
|
A:PRO771
|
4.3
|
67.7
|
1.0
|
|
CG
|
A:GLU763
|
4.4
|
53.8
|
1.0
|
|
CA
|
A:VAL773
|
4.4
|
76.5
|
1.0
|
|
OG1
|
A:THR769
|
4.4
|
76.4
|
1.0
|
|
N
|
A:GLY774
|
4.4
|
86.8
|
1.0
|
|
CA
|
A:GLY774
|
4.5
|
92.0
|
1.0
|
|
CB
|
A:ASP754
|
4.7
|
68.3
|
1.0
|
|
CE
|
A:LYS758
|
4.7
|
79.0
|
1.0
|
|
O
|
A:PRO771
|
4.7
|
77.8
|
1.0
|
|
CB
|
A:ASP756
|
4.8
|
72.4
|
1.0
|
|
CG2
|
A:VAL773
|
4.8
|
87.5
|
1.0
|
|
C
|
A:LEU772
|
4.8
|
75.5
|
1.0
|
|
CA
|
A:SER770
|
4.9
|
66.5
|
1.0
|
|
N
|
A:SER770
|
4.9
|
73.0
|
1.0
|
|
O
|
A:HOH903
|
5.0
|
69.8
|
1.0
|
|
Reference:
J.F.Ma,
Z.H.Xu,
Y.K.Zhang,
X.Cheng,
S.L.Fan,
J.W.Wang,
X.Y.Fang.
Structural Mechanism For Modulation of Functional Amyloid and Biofilm Formation By Staphylococcal Bap Protein Switch. Embo J. 2021.
ISSN: ESSN 1460-2075
DOI: 10.15252/EMBJ.2020107500
Page generated: Thu Jul 18 23:29:22 2024
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