Calcium in PDB 7c7u: Biofilm Associated Protein - Bsp Domain
Protein crystallography data
The structure of Biofilm Associated Protein - Bsp Domain, PDB code: 7c7u
was solved by
J.F.Ma,
Z.H.Xu,
Y.K.Zhang,
X.Cheng,
S.L.Fan,
J.W.Wang,
X.Y.Fang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.44 /
1.93
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
51.737,
167.726,
89.316,
90,
90,
90
|
|
R / Rfree (%)
|
20.8 /
25.5
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Biofilm Associated Protein - Bsp Domain
(pdb code 7c7u). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
Biofilm Associated Protein - Bsp Domain, PDB code: 7c7u:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 7c7u
Go back to
Calcium Binding Sites List in 7c7u
Calcium binding site 1 out
of 10 in the Biofilm Associated Protein - Bsp Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Biofilm Associated Protein - Bsp Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1001
b:33.5
occ:1.00
|
O
|
A:LYS502
|
2.3
|
28.9
|
1.0
|
|
OD1
|
A:ASN501
|
2.3
|
35.4
|
1.0
|
|
O
|
A:HOH1284
|
2.4
|
34.3
|
1.0
|
|
O
|
A:HOH1124
|
2.4
|
35.2
|
1.0
|
|
OD2
|
A:ASP417
|
2.4
|
31.0
|
1.0
|
|
OD1
|
A:ASN504
|
2.6
|
32.1
|
1.0
|
|
CG
|
A:ASP417
|
3.5
|
33.6
|
1.0
|
|
CG
|
A:ASN501
|
3.5
|
41.2
|
1.0
|
|
C
|
A:LYS502
|
3.5
|
28.9
|
1.0
|
|
CG
|
A:ASN504
|
3.7
|
29.2
|
1.0
|
|
OD1
|
A:ASP417
|
3.8
|
34.5
|
1.0
|
|
O
|
A:HOH1337
|
4.0
|
31.0
|
1.0
|
|
ND2
|
A:ASN501
|
4.1
|
39.1
|
1.0
|
|
N
|
A:LYS502
|
4.1
|
30.9
|
1.0
|
|
O
|
A:HOH1437
|
4.1
|
38.4
|
1.0
|
|
O
|
A:HOH1539
|
4.2
|
50.4
|
1.0
|
|
N
|
A:ASN504
|
4.2
|
24.9
|
1.0
|
|
OD2
|
A:ASP701
|
4.3
|
35.9
|
1.0
|
|
C
|
A:ASN501
|
4.4
|
31.6
|
1.0
|
|
CA
|
A:LEU503
|
4.4
|
23.6
|
1.0
|
|
N
|
A:LEU503
|
4.4
|
26.1
|
1.0
|
|
CA
|
A:LYS502
|
4.5
|
31.9
|
1.0
|
|
ND2
|
A:ASN504
|
4.5
|
29.2
|
1.0
|
|
O
|
A:HOH1591
|
4.6
|
42.3
|
1.0
|
|
CB
|
A:ASN504
|
4.7
|
26.1
|
1.0
|
|
CB
|
A:ASN501
|
4.7
|
35.6
|
1.0
|
|
O
|
A:ASN501
|
4.7
|
34.0
|
1.0
|
|
O
|
A:HOH1427
|
4.7
|
47.5
|
1.0
|
|
CB
|
A:ASP417
|
4.8
|
34.3
|
1.0
|
|
CA
|
A:ASN501
|
4.8
|
32.5
|
1.0
|
|
C
|
A:LEU503
|
4.9
|
26.6
|
1.0
|
|
Calcium binding site 2 out
of 10 in 7c7u
Go back to
Calcium Binding Sites List in 7c7u
Calcium binding site 2 out
of 10 in the Biofilm Associated Protein - Bsp Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Biofilm Associated Protein - Bsp Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1002
b:38.3
occ:1.00
|
OE2
|
A:GLU740
|
2.2
|
34.2
|
1.0
|
|
O
|
A:LEU735
|
2.3
|
31.8
|
1.0
|
|
OD1
|
A:ASP729
|
2.3
|
29.1
|
1.0
|
|
OD1
|
A:ASP733
|
2.4
|
39.6
|
1.0
|
|
OD1
|
A:ASP731
|
2.4
|
35.1
|
1.0
|
|
O
|
A:HOH1149
|
2.6
|
37.2
|
1.0
|
|
CG
|
A:ASP733
|
3.2
|
38.4
|
1.0
|
|
CD
|
A:GLU740
|
3.4
|
39.9
|
1.0
|
|
CG
|
A:ASP731
|
3.4
|
37.7
|
1.0
|
|
OD2
|
A:ASP733
|
3.4
|
37.5
|
1.0
|
|
CG
|
A:ASP729
|
3.4
|
32.8
|
1.0
|
|
C
|
A:LEU735
|
3.5
|
34.4
|
1.0
|
|
OD2
|
A:ASP731
|
3.7
|
39.5
|
1.0
|
|
N
|
A:LEU735
|
4.0
|
31.3
|
1.0
|
|
CG
|
A:GLU740
|
4.1
|
35.3
|
1.0
|
|
CA
|
A:CA1003
|
4.1
|
38.2
|
1.0
|
|
CA
|
A:LEU735
|
4.1
|
32.0
|
1.0
|
|
CB
|
A:LEU735
|
4.2
|
29.8
|
1.0
|
|
OD2
|
A:ASP729
|
4.2
|
31.6
|
1.0
|
|
N
|
A:ASP733
|
4.2
|
37.4
|
1.0
|
|
CA
|
A:ASP729
|
4.2
|
29.2
|
1.0
|
|
O
|
A:ALA748
|
4.2
|
44.3
|
1.0
|
|
OE1
|
A:GLU740
|
4.3
|
37.0
|
1.0
|
|
CB
|
A:ASP729
|
4.4
|
31.3
|
1.0
|
|
C
|
A:ASP729
|
4.4
|
28.2
|
1.0
|
|
N
|
A:ASP731
|
4.4
|
39.1
|
1.0
|
|
CB
|
A:ASP733
|
4.4
|
32.9
|
1.0
|
|
N
|
A:TYR730
|
4.5
|
28.0
|
1.0
|
|
C
|
A:LEU736
|
4.5
|
31.6
|
1.0
|
|
N
|
A:LEU736
|
4.6
|
33.8
|
1.0
|
|
N
|
A:ASP737
|
4.7
|
34.1
|
1.0
|
|
N
|
A:LYS732
|
4.7
|
31.9
|
1.0
|
|
OD1
|
A:ASP737
|
4.7
|
36.2
|
1.0
|
|
CB
|
A:ASP731
|
4.7
|
35.5
|
1.0
|
|
CA
|
A:ASP733
|
4.7
|
40.2
|
1.0
|
|
O
|
A:LEU736
|
4.7
|
35.5
|
1.0
|
|
N
|
A:GLY734
|
4.7
|
33.5
|
1.0
|
|
CA
|
A:ALA748
|
4.8
|
41.1
|
1.0
|
|
CA
|
A:LEU736
|
4.8
|
32.6
|
1.0
|
|
C
|
A:ALA748
|
4.9
|
44.9
|
1.0
|
|
C
|
A:ASP733
|
4.9
|
39.4
|
1.0
|
|
CA
|
A:ASP731
|
4.9
|
37.7
|
1.0
|
|
C
|
A:ASP731
|
4.9
|
39.4
|
1.0
|
|
O
|
A:ASP729
|
5.0
|
34.3
|
1.0
|
|
Calcium binding site 3 out
of 10 in 7c7u
Go back to
Calcium Binding Sites List in 7c7u
Calcium binding site 3 out
of 10 in the Biofilm Associated Protein - Bsp Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Biofilm Associated Protein - Bsp Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1003
b:38.2
occ:1.00
|
OD2
|
A:ASP733
|
2.1
|
37.5
|
1.0
|
|
O
|
A:ASP747
|
2.3
|
37.1
|
1.0
|
|
OE1
|
A:GLU740
|
2.3
|
37.0
|
1.0
|
|
OD2
|
A:ASP760
|
2.5
|
36.0
|
1.0
|
|
OD2
|
A:ASP731
|
2.5
|
39.5
|
1.0
|
|
O
|
A:ASN750
|
2.6
|
36.2
|
1.0
|
|
OE2
|
A:GLU740
|
2.7
|
34.2
|
1.0
|
|
CD
|
A:GLU740
|
2.8
|
39.9
|
1.0
|
|
CG
|
A:ASP733
|
3.3
|
38.4
|
1.0
|
|
CG
|
A:ASP760
|
3.4
|
40.1
|
1.0
|
|
CG
|
A:ASP731
|
3.5
|
37.7
|
1.0
|
|
C
|
A:ASP747
|
3.5
|
40.7
|
1.0
|
|
C
|
A:ASN750
|
3.6
|
35.6
|
1.0
|
|
OD1
|
A:ASP731
|
3.7
|
35.1
|
1.0
|
|
CB
|
A:ASP760
|
3.8
|
36.1
|
1.0
|
|
OD1
|
A:ASP733
|
4.0
|
39.6
|
1.0
|
|
CA
|
A:GLU751
|
4.1
|
38.1
|
1.0
|
|
CA
|
A:CA1002
|
4.1
|
38.3
|
1.0
|
|
OG1
|
A:THR753
|
4.1
|
42.3
|
1.0
|
|
N
|
A:GLU751
|
4.2
|
38.3
|
1.0
|
|
CA
|
A:ALA748
|
4.3
|
41.1
|
1.0
|
|
N
|
A:ASN750
|
4.3
|
43.7
|
1.0
|
|
N
|
A:ALA748
|
4.3
|
44.5
|
1.0
|
|
CG
|
A:GLU740
|
4.3
|
35.3
|
1.0
|
|
CB
|
A:ASP733
|
4.4
|
32.9
|
1.0
|
|
OD1
|
A:ASP760
|
4.4
|
34.5
|
1.0
|
|
N
|
A:ASP747
|
4.4
|
43.2
|
1.0
|
|
C
|
A:ALA748
|
4.5
|
44.9
|
1.0
|
|
C
|
A:GLU751
|
4.5
|
37.3
|
1.0
|
|
CA
|
A:ASP747
|
4.5
|
43.5
|
1.0
|
|
CA
|
A:ASN750
|
4.6
|
41.7
|
1.0
|
|
CB
|
A:SER746
|
4.6
|
40.2
|
1.0
|
|
OG
|
A:SER746
|
4.7
|
45.0
|
1.0
|
|
O
|
A:GLU751
|
4.7
|
37.0
|
1.0
|
|
CB
|
A:ASP731
|
4.8
|
35.5
|
1.0
|
|
O
|
A:ALA748
|
4.8
|
44.3
|
1.0
|
|
N
|
A:GLU749
|
4.9
|
48.2
|
1.0
|
|
C
|
A:SER746
|
4.9
|
44.5
|
1.0
|
|
CB
|
A:ASP747
|
5.0
|
44.0
|
1.0
|
|
Calcium binding site 4 out
of 10 in 7c7u
Go back to
Calcium Binding Sites List in 7c7u
Calcium binding site 4 out
of 10 in the Biofilm Associated Protein - Bsp Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Biofilm Associated Protein - Bsp Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1004
b:37.0
occ:1.00
|
O
|
A:LYS758
|
2.2
|
34.1
|
1.0
|
|
OD1
|
A:ASP752
|
2.3
|
39.8
|
1.0
|
|
OD1
|
A:ASP756
|
2.3
|
35.0
|
1.0
|
|
OE1
|
A:GLU763
|
2.3
|
36.9
|
1.0
|
|
OD1
|
A:ASP754
|
2.4
|
40.5
|
1.0
|
|
CG
|
A:ASP754
|
3.1
|
38.4
|
1.0
|
|
CG
|
A:ASP756
|
3.1
|
42.7
|
1.0
|
|
OD2
|
A:ASP754
|
3.2
|
39.8
|
1.0
|
|
C
|
A:LYS758
|
3.4
|
35.8
|
1.0
|
|
CD
|
A:GLU763
|
3.4
|
39.2
|
1.0
|
|
CG
|
A:ASP752
|
3.5
|
41.3
|
1.0
|
|
OD2
|
A:ASP756
|
3.6
|
40.9
|
1.0
|
|
N
|
A:LYS758
|
3.9
|
36.3
|
1.0
|
|
N
|
A:ASP756
|
4.0
|
40.9
|
1.0
|
|
CA
|
A:CA1005
|
4.1
|
40.0
|
1.0
|
|
CA
|
A:LYS758
|
4.1
|
40.3
|
1.0
|
|
CG
|
A:GLU763
|
4.1
|
36.6
|
1.0
|
|
OD2
|
A:ASP752
|
4.2
|
41.3
|
1.0
|
|
CB
|
A:LYS758
|
4.3
|
40.1
|
1.0
|
|
CB
|
A:ASP756
|
4.3
|
38.8
|
1.0
|
|
N
|
A:ASP754
|
4.3
|
34.0
|
1.0
|
|
CA
|
A:ASP752
|
4.4
|
40.5
|
1.0
|
|
OD1
|
A:ASP760
|
4.4
|
34.5
|
1.0
|
|
OE2
|
A:GLU763
|
4.4
|
39.8
|
1.0
|
|
CB
|
A:ASP754
|
4.4
|
33.7
|
1.0
|
|
CB
|
A:ASP752
|
4.5
|
38.7
|
1.0
|
|
N
|
A:ASN759
|
4.5
|
38.2
|
1.0
|
|
N
|
A:GLY757
|
4.5
|
41.2
|
1.0
|
|
C
|
A:ASP752
|
4.5
|
39.5
|
1.0
|
|
N
|
A:GLY755
|
4.5
|
41.9
|
1.0
|
|
CA
|
A:ASP756
|
4.5
|
46.9
|
1.0
|
|
O
|
A:PRO771
|
4.6
|
33.6
|
1.0
|
|
N
|
A:THR753
|
4.7
|
34.9
|
1.0
|
|
CA
|
A:ASP754
|
4.7
|
38.7
|
1.0
|
|
CA
|
A:ASN759
|
4.7
|
34.1
|
1.0
|
|
C
|
A:ASP756
|
4.7
|
43.8
|
1.0
|
|
C
|
A:ASN759
|
4.8
|
37.5
|
1.0
|
|
CA
|
A:PRO771
|
4.8
|
37.6
|
1.0
|
|
C
|
A:ASP754
|
4.9
|
41.2
|
1.0
|
|
C
|
A:GLY757
|
5.0
|
42.9
|
1.0
|
|
Calcium binding site 5 out
of 10 in 7c7u
Go back to
Calcium Binding Sites List in 7c7u
Calcium binding site 5 out
of 10 in the Biofilm Associated Protein - Bsp Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Biofilm Associated Protein - Bsp Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1005
b:40.0
occ:1.00
|
OE1
|
A:GLU849
|
2.3
|
44.6
|
1.0
|
|
O
|
A:VAL773
|
2.3
|
34.3
|
1.0
|
|
OE2
|
A:GLU763
|
2.4
|
39.8
|
1.0
|
|
O
|
A:SER770
|
2.4
|
33.5
|
1.0
|
|
OD2
|
A:ASP756
|
2.5
|
40.9
|
1.0
|
|
OD2
|
A:ASP754
|
2.6
|
39.8
|
1.0
|
|
OE1
|
A:GLU763
|
2.6
|
36.9
|
1.0
|
|
CD
|
A:GLU763
|
2.9
|
39.2
|
1.0
|
|
C
|
A:VAL773
|
3.3
|
33.8
|
1.0
|
|
CG
|
A:ASP754
|
3.4
|
38.4
|
1.0
|
|
CD
|
A:GLU849
|
3.4
|
39.0
|
1.0
|
|
CG
|
A:ASP756
|
3.5
|
42.7
|
1.0
|
|
C
|
A:SER770
|
3.6
|
43.1
|
1.0
|
|
OD1
|
A:ASP754
|
3.7
|
40.5
|
1.0
|
|
N
|
A:VAL773
|
4.0
|
35.3
|
1.0
|
|
CA
|
A:CA1004
|
4.1
|
37.0
|
1.0
|
|
CA
|
A:PRO771
|
4.1
|
37.6
|
1.0
|
|
OD1
|
A:ASP756
|
4.1
|
35.0
|
1.0
|
|
CG
|
A:GLU849
|
4.1
|
38.8
|
1.0
|
|
N
|
A:GLY774
|
4.2
|
37.4
|
1.0
|
|
CA
|
A:VAL773
|
4.2
|
36.5
|
1.0
|
|
CA
|
A:GLY774
|
4.3
|
37.4
|
1.0
|
|
N
|
A:PRO771
|
4.3
|
37.5
|
1.0
|
|
OE2
|
A:GLU849
|
4.3
|
41.0
|
1.0
|
|
C
|
A:PRO771
|
4.3
|
38.0
|
1.0
|
|
CG
|
A:GLU763
|
4.4
|
36.6
|
1.0
|
|
CB
|
A:ASP756
|
4.5
|
38.8
|
1.0
|
|
CE
|
A:LYS758
|
4.6
|
42.5
|
1.0
|
|
CB
|
A:ASP754
|
4.6
|
33.7
|
1.0
|
|
OG1
|
A:THR769
|
4.7
|
41.8
|
1.0
|
|
N
|
A:LEU772
|
4.7
|
37.3
|
1.0
|
|
NZ
|
A:LYS758
|
4.7
|
38.8
|
1.0
|
|
CB
|
A:VAL773
|
4.8
|
34.6
|
1.0
|
|
CA
|
A:SER770
|
4.8
|
38.7
|
1.0
|
|
O
|
A:PRO771
|
4.8
|
33.6
|
1.0
|
|
N
|
A:SER770
|
4.8
|
40.0
|
1.0
|
|
C
|
A:GLY774
|
4.8
|
40.1
|
1.0
|
|
O
|
A:GLY774
|
4.9
|
35.4
|
1.0
|
|
CB
|
A:THR769
|
4.9
|
41.7
|
1.0
|
|
Calcium binding site 6 out
of 10 in 7c7u
Go back to
Calcium Binding Sites List in 7c7u
Calcium binding site 6 out
of 10 in the Biofilm Associated Protein - Bsp Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Biofilm Associated Protein - Bsp Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1001
b:33.8
occ:1.00
|
O
|
B:LYS502
|
2.3
|
28.1
|
1.0
|
|
OD1
|
B:ASN501
|
2.3
|
32.4
|
1.0
|
|
O
|
B:HOH1331
|
2.4
|
35.2
|
1.0
|
|
OD2
|
B:ASP417
|
2.4
|
30.3
|
1.0
|
|
OD1
|
B:ASN504
|
2.6
|
31.3
|
1.0
|
|
CG
|
B:ASP417
|
3.5
|
34.8
|
1.0
|
|
CG
|
B:ASN501
|
3.5
|
42.5
|
1.0
|
|
C
|
B:LYS502
|
3.5
|
28.8
|
1.0
|
|
CG
|
B:ASN504
|
3.7
|
29.1
|
1.0
|
|
OD1
|
B:ASP417
|
3.9
|
35.2
|
1.0
|
|
O
|
B:HOH1391
|
4.0
|
40.0
|
1.0
|
|
O
|
B:HOH1360
|
4.0
|
28.7
|
1.0
|
|
O
|
B:HOH1563
|
4.1
|
30.0
|
1.0
|
|
ND2
|
B:ASN501
|
4.1
|
40.8
|
1.0
|
|
N
|
B:LYS502
|
4.1
|
31.8
|
1.0
|
|
N
|
B:ASN504
|
4.2
|
22.4
|
1.0
|
|
C
|
B:ASN501
|
4.3
|
33.6
|
1.0
|
|
OD2
|
B:ASP701
|
4.4
|
36.2
|
1.0
|
|
N
|
B:LEU503
|
4.4
|
25.0
|
1.0
|
|
CA
|
B:LYS502
|
4.4
|
32.1
|
1.0
|
|
CA
|
B:LEU503
|
4.4
|
24.3
|
1.0
|
|
O
|
B:HOH1568
|
4.5
|
45.5
|
1.0
|
|
ND2
|
B:ASN504
|
4.5
|
29.6
|
1.0
|
|
O
|
B:ASN501
|
4.7
|
33.5
|
1.0
|
|
CB
|
B:ASN504
|
4.7
|
26.9
|
1.0
|
|
CB
|
B:ASN501
|
4.7
|
35.6
|
1.0
|
|
CB
|
B:ASP417
|
4.8
|
34.6
|
1.0
|
|
CA
|
B:ASN501
|
4.8
|
36.9
|
1.0
|
|
C
|
B:LEU503
|
4.9
|
27.2
|
1.0
|
|
O
|
B:HOH1544
|
5.0
|
30.0
|
1.0
|
|
Calcium binding site 7 out
of 10 in 7c7u
Go back to
Calcium Binding Sites List in 7c7u
Calcium binding site 7 out
of 10 in the Biofilm Associated Protein - Bsp Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Biofilm Associated Protein - Bsp Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1002
b:38.6
occ:1.00
|
OE2
|
B:GLU740
|
2.2
|
33.6
|
1.0
|
|
OD1
|
B:ASP729
|
2.3
|
27.9
|
1.0
|
|
O
|
B:LEU735
|
2.3
|
34.7
|
1.0
|
|
OD1
|
B:ASP733
|
2.4
|
37.5
|
1.0
|
|
OD1
|
B:ASP731
|
2.5
|
34.1
|
1.0
|
|
O
|
B:HOH1153
|
2.6
|
34.9
|
1.0
|
|
CG
|
B:ASP733
|
3.2
|
40.8
|
1.0
|
|
CG
|
B:ASP729
|
3.3
|
32.5
|
1.0
|
|
CD
|
B:GLU740
|
3.4
|
39.1
|
1.0
|
|
C
|
B:LEU735
|
3.4
|
34.4
|
1.0
|
|
CG
|
B:ASP731
|
3.4
|
38.0
|
1.0
|
|
OD2
|
B:ASP733
|
3.4
|
38.9
|
1.0
|
|
OD2
|
B:ASP731
|
3.8
|
38.1
|
1.0
|
|
N
|
B:LEU735
|
3.9
|
32.0
|
1.0
|
|
OD2
|
B:ASP729
|
4.0
|
33.9
|
1.0
|
|
CA
|
B:LEU735
|
4.1
|
34.0
|
1.0
|
|
CG
|
B:GLU740
|
4.1
|
36.8
|
1.0
|
|
CA
|
B:CA1003
|
4.1
|
39.3
|
1.0
|
|
N
|
B:ASP733
|
4.1
|
36.8
|
1.0
|
|
CB
|
B:LEU735
|
4.1
|
29.5
|
1.0
|
|
CA
|
B:ASP729
|
4.2
|
28.2
|
1.0
|
|
O
|
B:ALA748
|
4.3
|
43.5
|
1.0
|
|
CB
|
B:ASP729
|
4.3
|
28.6
|
1.0
|
|
OE1
|
B:GLU740
|
4.3
|
36.6
|
1.0
|
|
N
|
B:ASP731
|
4.4
|
37.0
|
1.0
|
|
C
|
B:ASP729
|
4.4
|
24.2
|
1.0
|
|
CB
|
B:ASP733
|
4.4
|
33.5
|
1.0
|
|
C
|
B:LEU736
|
4.5
|
32.7
|
1.0
|
|
N
|
B:TYR730
|
4.5
|
28.7
|
1.0
|
|
N
|
B:LEU736
|
4.5
|
33.1
|
1.0
|
|
N
|
B:LYS732
|
4.6
|
33.9
|
1.0
|
|
OD1
|
B:ASP737
|
4.6
|
37.1
|
1.0
|
|
N
|
B:ASP737
|
4.7
|
36.4
|
1.0
|
|
CA
|
B:ASP733
|
4.7
|
39.9
|
1.0
|
|
O
|
B:LEU736
|
4.7
|
33.4
|
1.0
|
|
N
|
B:GLY734
|
4.7
|
36.7
|
1.0
|
|
CB
|
B:ASP731
|
4.7
|
36.0
|
1.0
|
|
CA
|
B:LEU736
|
4.8
|
33.8
|
1.0
|
|
CA
|
B:ALA748
|
4.8
|
38.4
|
1.0
|
|
C
|
B:ASP733
|
4.9
|
38.8
|
1.0
|
|
C
|
B:ASP731
|
4.9
|
39.0
|
1.0
|
|
CA
|
B:ASP731
|
4.9
|
37.7
|
1.0
|
|
C
|
B:ALA748
|
4.9
|
46.0
|
1.0
|
|
O
|
B:ASP729
|
5.0
|
34.1
|
1.0
|
|
Calcium binding site 8 out
of 10 in 7c7u
Go back to
Calcium Binding Sites List in 7c7u
Calcium binding site 8 out
of 10 in the Biofilm Associated Protein - Bsp Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Biofilm Associated Protein - Bsp Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1003
b:39.3
occ:1.00
|
OD2
|
B:ASP733
|
2.2
|
38.9
|
1.0
|
|
O
|
B:ASP747
|
2.2
|
36.8
|
1.0
|
|
OE1
|
B:GLU740
|
2.3
|
36.6
|
1.0
|
|
OD2
|
B:ASP760
|
2.5
|
34.6
|
1.0
|
|
O
|
B:ASN750
|
2.5
|
35.7
|
1.0
|
|
OD2
|
B:ASP731
|
2.6
|
38.1
|
1.0
|
|
OE2
|
B:GLU740
|
2.7
|
33.6
|
1.0
|
|
CD
|
B:GLU740
|
2.9
|
39.1
|
1.0
|
|
CG
|
B:ASP733
|
3.4
|
40.8
|
1.0
|
|
CG
|
B:ASP760
|
3.4
|
38.6
|
1.0
|
|
C
|
B:ASP747
|
3.4
|
41.5
|
1.0
|
|
CG
|
B:ASP731
|
3.4
|
38.0
|
1.0
|
|
C
|
B:ASN750
|
3.5
|
33.0
|
1.0
|
|
OD1
|
B:ASP731
|
3.7
|
34.1
|
1.0
|
|
CB
|
B:ASP760
|
3.8
|
35.0
|
1.0
|
|
OG1
|
B:THR753
|
4.0
|
43.2
|
1.0
|
|
OD1
|
B:ASP733
|
4.0
|
37.5
|
1.0
|
|
CA
|
B:GLU751
|
4.1
|
37.6
|
1.0
|
|
CA
|
B:CA1002
|
4.1
|
38.6
|
1.0
|
|
N
|
B:GLU751
|
4.2
|
36.2
|
1.0
|
|
CA
|
B:ALA748
|
4.2
|
38.4
|
1.0
|
|
N
|
B:ASN750
|
4.3
|
42.9
|
1.0
|
|
N
|
B:ALA748
|
4.3
|
45.0
|
1.0
|
|
CG
|
B:GLU740
|
4.4
|
36.8
|
1.0
|
|
N
|
B:ASP747
|
4.4
|
44.9
|
1.0
|
|
C
|
B:ALA748
|
4.4
|
46.0
|
1.0
|
|
CB
|
B:ASP733
|
4.4
|
33.5
|
1.0
|
|
CA
|
B:ASP747
|
4.5
|
42.1
|
1.0
|
|
OD1
|
B:ASP760
|
4.5
|
35.2
|
1.0
|
|
C
|
B:GLU751
|
4.5
|
38.4
|
1.0
|
|
CA
|
B:ASN750
|
4.5
|
39.9
|
1.0
|
|
CB
|
B:SER746
|
4.6
|
38.2
|
1.0
|
|
OG
|
B:SER746
|
4.7
|
45.3
|
1.0
|
|
O
|
B:GLU751
|
4.7
|
37.3
|
1.0
|
|
O
|
B:ALA748
|
4.7
|
43.5
|
1.0
|
|
CB
|
B:ASP731
|
4.8
|
36.0
|
1.0
|
|
N
|
B:GLU749
|
4.9
|
47.4
|
1.0
|
|
CB
|
B:ASP747
|
4.9
|
44.4
|
1.0
|
|
C
|
B:SER746
|
4.9
|
44.5
|
1.0
|
|
Calcium binding site 9 out
of 10 in 7c7u
Go back to
Calcium Binding Sites List in 7c7u
Calcium binding site 9 out
of 10 in the Biofilm Associated Protein - Bsp Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Biofilm Associated Protein - Bsp Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1004
b:35.6
occ:1.00
|
OD1
|
B:ASP756
|
2.2
|
33.6
|
1.0
|
|
O
|
B:LYS758
|
2.3
|
34.0
|
1.0
|
|
OE1
|
B:GLU763
|
2.3
|
37.1
|
1.0
|
|
OD1
|
B:ASP752
|
2.3
|
40.1
|
1.0
|
|
O
|
B:HOH1214
|
2.4
|
33.4
|
1.0
|
|
CG
|
B:ASP756
|
3.1
|
42.9
|
1.0
|
|
CB
|
B:ASP754
|
3.1
|
43.0
|
1.0
|
|
CD
|
B:GLU763
|
3.4
|
39.7
|
1.0
|
|
C
|
B:LYS758
|
3.4
|
36.1
|
1.0
|
|
OD2
|
B:ASP756
|
3.5
|
40.6
|
1.0
|
|
OD2
|
B:ASP754
|
3.5
|
44.1
|
1.0
|
|
CG
|
B:ASP752
|
3.5
|
41.1
|
1.0
|
|
CG
|
B:ASP754
|
3.7
|
38.2
|
1.0
|
|
N
|
B:LYS758
|
4.0
|
36.0
|
1.0
|
|
CA
|
B:CA1005
|
4.0
|
40.3
|
1.0
|
|
N
|
B:ASP754
|
4.0
|
37.0
|
1.0
|
|
CA
|
B:LYS758
|
4.1
|
39.4
|
1.0
|
|
CG
|
B:GLU763
|
4.1
|
36.6
|
1.0
|
|
N
|
B:ASP756
|
4.1
|
39.5
|
1.0
|
|
CA
|
B:ASP754
|
4.1
|
46.1
|
1.0
|
|
CB
|
B:LYS758
|
4.2
|
38.7
|
1.0
|
|
OD2
|
B:ASP752
|
4.2
|
43.3
|
1.0
|
|
CB
|
B:ASP756
|
4.2
|
39.3
|
1.0
|
|
OE2
|
B:GLU763
|
4.4
|
37.6
|
1.0
|
|
OD1
|
B:ASP760
|
4.4
|
35.2
|
1.0
|
|
CA
|
B:ASP752
|
4.4
|
40.5
|
1.0
|
|
N
|
B:ASN759
|
4.5
|
36.9
|
1.0
|
|
CB
|
B:ASP752
|
4.5
|
37.3
|
1.0
|
|
CA
|
B:ASP756
|
4.5
|
45.2
|
1.0
|
|
N
|
B:GLY757
|
4.6
|
42.2
|
1.0
|
|
C
|
B:ASP752
|
4.6
|
39.8
|
1.0
|
|
N
|
B:GLY755
|
4.6
|
38.8
|
1.0
|
|
O
|
B:PRO771
|
4.6
|
33.9
|
1.0
|
|
C
|
B:ASP754
|
4.7
|
42.5
|
1.0
|
|
C
|
B:ASP756
|
4.7
|
40.9
|
1.0
|
|
CA
|
B:ASN759
|
4.8
|
36.6
|
1.0
|
|
C
|
B:ASN759
|
4.8
|
36.0
|
1.0
|
|
N
|
B:THR753
|
4.8
|
35.9
|
1.0
|
|
CA
|
B:PRO771
|
4.8
|
36.0
|
1.0
|
|
OD1
|
B:ASP754
|
4.9
|
45.9
|
1.0
|
|
O
|
B:ASN759
|
5.0
|
36.4
|
1.0
|
|
Calcium binding site 10 out
of 10 in 7c7u
Go back to
Calcium Binding Sites List in 7c7u
Calcium binding site 10 out
of 10 in the Biofilm Associated Protein - Bsp Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Biofilm Associated Protein - Bsp Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1005
b:40.3
occ:1.00
|
OD2
|
B:ASP754
|
2.3
|
44.1
|
1.0
|
|
OE1
|
B:GLU849
|
2.4
|
42.9
|
1.0
|
|
O
|
B:VAL773
|
2.4
|
36.8
|
1.0
|
|
OE2
|
B:GLU763
|
2.4
|
37.6
|
1.0
|
|
O
|
B:SER770
|
2.4
|
32.7
|
1.0
|
|
OD2
|
B:ASP756
|
2.6
|
40.6
|
1.0
|
|
OE1
|
B:GLU763
|
2.6
|
37.1
|
1.0
|
|
CD
|
B:GLU763
|
2.8
|
39.7
|
1.0
|
|
CG
|
B:ASP754
|
3.4
|
38.2
|
1.0
|
|
C
|
B:VAL773
|
3.4
|
37.3
|
1.0
|
|
CD
|
B:GLU849
|
3.5
|
37.2
|
1.0
|
|
CG
|
B:ASP756
|
3.6
|
42.9
|
1.0
|
|
C
|
B:SER770
|
3.6
|
44.0
|
1.0
|
|
N
|
B:VAL773
|
4.0
|
37.3
|
1.0
|
|
CA
|
B:CA1004
|
4.0
|
35.6
|
1.0
|
|
CA
|
B:PRO771
|
4.0
|
36.0
|
1.0
|
|
CB
|
B:ASP754
|
4.1
|
43.0
|
1.0
|
|
CG
|
B:GLU849
|
4.1
|
37.8
|
1.0
|
|
OD1
|
B:ASP756
|
4.2
|
33.6
|
1.0
|
|
N
|
B:GLY774
|
4.2
|
39.3
|
1.0
|
|
CA
|
B:VAL773
|
4.3
|
38.9
|
1.0
|
|
N
|
B:PRO771
|
4.3
|
35.8
|
1.0
|
|
CA
|
B:GLY774
|
4.3
|
39.1
|
1.0
|
|
OD1
|
B:ASP754
|
4.3
|
45.9
|
1.0
|
|
C
|
B:PRO771
|
4.3
|
36.5
|
1.0
|
|
CG
|
B:GLU763
|
4.3
|
36.6
|
1.0
|
|
OE2
|
B:GLU849
|
4.4
|
42.4
|
1.0
|
|
CE
|
B:LYS758
|
4.5
|
41.8
|
1.0
|
|
NZ
|
B:LYS758
|
4.6
|
38.4
|
1.0
|
|
OG1
|
B:THR769
|
4.6
|
40.1
|
1.0
|
|
O
|
B:HOH1214
|
4.7
|
33.4
|
1.0
|
|
CB
|
B:ASP756
|
4.7
|
39.3
|
1.0
|
|
N
|
B:LEU772
|
4.7
|
35.5
|
1.0
|
|
CA
|
B:SER770
|
4.8
|
39.7
|
1.0
|
|
O
|
B:PRO771
|
4.8
|
33.9
|
1.0
|
|
CB
|
B:VAL773
|
4.8
|
34.8
|
1.0
|
|
N
|
B:SER770
|
4.8
|
39.8
|
1.0
|
|
C
|
B:GLY774
|
4.8
|
40.0
|
1.0
|
|
CB
|
B:THR769
|
4.9
|
40.1
|
1.0
|
|
O
|
B:GLY774
|
4.9
|
35.5
|
1.0
|
|
Reference:
J.F.Ma,
Z.H.Xu,
Y.K.Zhang,
X.Cheng,
S.L.Fan,
J.W.Wang,
X.Y.Fang.
Structural Mechanism For Modulation of Functional Amyloid and Biofilm Formation By Staphylococcal Bap Protein Switch. Embo J. 2021.
ISSN: ESSN 1460-2075
DOI: 10.15252/EMBJ.2020107500
Page generated: Thu Jul 18 23:29:37 2024
|
