Calcium in PDB 7c98: Human DMC1 Post-Synaptic Complexes

The binding sites of Calcium atom in the Human DMC1 Post-Synaptic Complexes (pdb code 7c98). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Human DMC1 Post-Synaptic Complexes, PDB code: 7c98:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Human DMC1 Post-Synaptic Complexes


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human DMC1 Post-Synaptic Complexes within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:62.2 occ:1.00 O1B A:ANP402 2.2 82.8 1.0 O3G A:ANP402 2.2 82.8 1.0 CG2 A:THR133 2.7 78.6 1.0 N3B A:ANP402 3.2 82.8 1.0 PB A:ANP402 3.2 82.8 1.0 PG A:ANP402 3.3 82.8 1.0 OG1 A:THR133 3.5 78.6 1.0 OE1 A:GLU162 3.5 94.3 1.0 CB A:THR133 3.7 78.6 1.0 O1A A:ANP402 4.1 82.8 1.0 OG1 A:THR164 4.1 96.1 1.0 O1G A:ANP402 4.1 82.8 1.0 O2B A:ANP402 4.1 82.8 1.0 CG2 A:THR164 4.2 96.1 1.0 O2G A:ANP402 4.5 82.8 1.0 O3A A:ANP402 4.5 82.8 1.0 N A:THR133 4.5 78.6 1.0 CB A:THR164 4.6 96.1 1.0 CD A:GLU162 4.7 94.3 1.0 PA A:ANP402 4.7 82.8 1.0 CA A:THR133 4.8 78.6 1.0

Calcium binding site 2 out of 3 in the Human DMC1 Post-Synaptic Complexes


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Human DMC1 Post-Synaptic Complexes within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca401 b:50.8 occ:1.00 O3G B:ANP402 1.9 66.7 1.0 O1B B:ANP402 2.3 66.7 1.0 CG2 B:THR133 2.6 61.3 1.0 PG B:ANP402 3.2 66.7 1.0 OE1 B:GLU162 3.4 76.1 1.0 PB B:ANP402 3.5 66.7 1.0 OG1 B:THR133 3.6 61.3 1.0 N3B B:ANP402 3.6 66.7 1.0 CB B:THR133 3.7 61.3 1.0 O1G B:ANP402 3.8 66.7 1.0 OG1 B:THR164 4.0 78.3 1.0 CG2 B:THR164 4.2 78.3 1.0 O1A B:ANP402 4.2 66.7 1.0 O2B B:ANP402 4.3 66.7 1.0 O2A B:ANP402 4.4 66.7 1.0 O2G B:ANP402 4.5 66.7 1.0 N B:THR133 4.5 61.3 1.0 CB B:THR164 4.5 78.3 1.0 CD B:GLU162 4.6 76.1 1.0 O3A B:ANP402 4.6 66.7 1.0 PA B:ANP402 4.6 66.7 1.0 CA B:THR133 4.7 61.3 1.0 OD1 B:ASP223 5.0 71.5 1.0

Calcium binding site 3 out of 3 in the Human DMC1 Post-Synaptic Complexes


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Human DMC1 Post-Synaptic Complexes within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca402 b:56.8 occ:1.00 O1B C:ANP401 2.1 60.2 1.0 O1G C:ANP401 2.8 60.2 1.0 CG2 C:THR133 2.8 55.4 1.0 PB C:ANP401 3.0 60.2 1.0 O2B C:ANP401 3.0 60.2 1.0 OE1 C:GLU162 3.1 71.3 1.0 PG C:ANP401 3.6 60.2 1.0 N3B C:ANP401 3.8 60.2 1.0 O3G C:ANP401 3.8 60.2 1.0 OG1 C:THR133 4.0 55.4 1.0 CB C:THR133 4.0 55.4 1.0 OG1 C:THR164 4.0 72.3 1.0 CG2 C:THR164 4.2 72.3 1.0 CD C:GLU162 4.2 71.3 1.0 O3A C:ANP401 4.3 60.2 1.0 O2A C:ANP401 4.5 60.2 1.0 O1A C:ANP401 4.5 60.2 1.0 CB C:THR164 4.6 72.3 1.0 OE2 C:GLU162 4.7 71.3 1.0 PA C:ANP401 4.7 60.2 1.0 N C:THR133 4.8 55.4 1.0 OD1 C:ASP223 4.8 59.9 1.0

S.C.Luo, H.Y.Yeh. Identification of Fidelity-Governing Factors in Human Recombinases DMC1 and RAD51 From Cryo-Em Structures To Be Published.