Calcium in PDB 7c99: Human DMC1 Post-Synaptic Complexes with Mismatched Dsdna

The binding sites of Calcium atom in the Human DMC1 Post-Synaptic Complexes with Mismatched Dsdna (pdb code 7c99). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Human DMC1 Post-Synaptic Complexes with Mismatched Dsdna, PDB code: 7c99:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Human DMC1 Post-Synaptic Complexes with Mismatched Dsdna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human DMC1 Post-Synaptic Complexes with Mismatched Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:50.1 occ:1.00 O2G A:ANP402 2.1 54.7 1.0 O1B A:ANP402 2.4 54.7 1.0 CG2 A:THR133 2.5 51.4 1.0 OE1 A:GLU162 3.1 63.6 1.0 PG A:ANP402 3.4 54.7 1.0 PB A:ANP402 3.6 54.7 1.0 CB A:THR133 3.7 51.4 1.0 OG1 A:THR133 3.7 51.4 1.0 N3B A:ANP402 3.8 54.7 1.0 OG1 A:THR164 4.1 61.6 1.0 CD A:GLU162 4.1 63.6 1.0 O1G A:ANP402 4.2 54.7 1.0 O1A A:ANP402 4.3 54.7 1.0 CB A:THR164 4.3 61.6 1.0 CG2 A:THR164 4.4 61.6 1.0 OE2 A:GLU162 4.4 63.6 1.0 N A:THR133 4.5 51.4 1.0 O3G A:ANP402 4.5 54.7 1.0 O2A A:ANP402 4.6 54.7 1.0 O3A A:ANP402 4.6 54.7 1.0 O2B A:ANP402 4.7 54.7 1.0 CA A:THR133 4.7 51.4 1.0 PA A:ANP402 4.7 54.7 1.0

Calcium binding site 2 out of 3 in the Human DMC1 Post-Synaptic Complexes with Mismatched Dsdna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Human DMC1 Post-Synaptic Complexes with Mismatched Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca401 b:42.2 occ:1.00 O2G B:ANP402 2.1 49.4 1.0 O1B B:ANP402 2.4 49.4 1.0 CG2 B:THR133 2.7 46.0 1.0 OE1 B:GLU162 2.9 56.5 1.0 PG B:ANP402 3.4 49.4 1.0 PB B:ANP402 3.6 49.4 1.0 N3B B:ANP402 3.8 49.4 1.0 CD B:GLU162 3.9 56.5 1.0 CB B:THR133 3.9 46.0 1.0 OG1 B:THR133 4.0 46.0 1.0 OG1 B:THR164 4.0 56.3 1.0 OE2 B:GLU162 4.2 56.5 1.0 O1G B:ANP402 4.2 49.4 1.0 O1A B:ANP402 4.3 49.4 1.0 CB B:THR164 4.3 56.3 1.0 O3G B:ANP402 4.5 49.4 1.0 CG2 B:THR164 4.5 56.3 1.0 O2A B:ANP402 4.6 49.4 1.0 O3A B:ANP402 4.6 49.4 1.0 O2B B:ANP402 4.7 49.4 1.0 PA B:ANP402 4.7 49.4 1.0 N B:THR133 4.7 46.0 1.0 CA B:THR133 5.0 46.0 1.0

Calcium binding site 3 out of 3 in the Human DMC1 Post-Synaptic Complexes with Mismatched Dsdna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Human DMC1 Post-Synaptic Complexes with Mismatched Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca402 b:42.6 occ:1.00 O2G C:ANP401 2.1 47.4 1.0 CG2 C:THR133 2.5 44.0 1.0 O1B C:ANP401 2.6 47.4 1.0 OE1 C:GLU162 2.9 57.3 1.0 PG C:ANP401 3.6 47.4 1.0 CB C:THR133 3.7 44.0 1.0 OG1 C:THR133 3.8 44.0 1.0 PB C:ANP401 3.8 47.4 1.0 OG1 C:THR164 3.9 54.0 1.0 CD C:GLU162 4.0 57.3 1.0 N3B C:ANP401 4.0 47.4 1.0 O1A C:ANP401 4.1 47.4 1.0 CB C:THR164 4.2 54.0 1.0 OE2 C:GLU162 4.3 57.3 1.0 CG2 C:THR164 4.4 54.0 1.0 O1G C:ANP401 4.4 47.4 1.0 O3G C:ANP401 4.5 47.4 1.0 N C:THR133 4.6 44.0 1.0 O2B C:ANP401 4.8 47.4 1.0 CA C:THR133 4.8 44.0 1.0 PA C:ANP401 4.8 47.4 1.0 O2A C:ANP401 4.8 47.4 1.0 O3A C:ANP401 4.9 47.4 1.0 OD2 C:ASP223 4.9 50.7 1.0

S.C.Luo, H.Y.Yeh. Identification of Fidelity-Governing Factors in Human Recombinases DMC1 and RAD51 From Cryo-Em Structures To Be Published.