Calcium in PDB 7c9c: Human DMC1 Pre-Synaptic Complexes

The binding sites of Calcium atom in the Human DMC1 Pre-Synaptic Complexes (pdb code 7c9c). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Human DMC1 Pre-Synaptic Complexes, PDB code: 7c9c:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Human DMC1 Pre-Synaptic Complexes


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human DMC1 Pre-Synaptic Complexes within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:30.0 occ:1.00 O1G A:ANP402 2.0 45.3 1.0 O1B A:ANP402 2.3 45.3 1.0 CG2 A:THR133 2.7 41.5 1.0 OE2 A:GLU162 2.7 55.8 1.0 PG A:ANP402 3.2 45.3 1.0 PB A:ANP402 3.4 45.3 1.0 N3B A:ANP402 3.6 45.3 1.0 OG1 A:THR133 3.7 41.5 1.0 CB A:THR133 3.8 41.5 1.0 CD A:GLU162 3.8 55.8 1.0 O2G A:ANP402 3.9 45.3 1.0 O2B A:ANP402 4.1 45.3 1.0 OG1 A:THR164 4.3 54.4 1.0 OE1 A:GLU162 4.4 55.8 1.0 O1A A:ANP402 4.4 45.3 1.0 N A:THR133 4.4 41.5 1.0 O3G A:ANP402 4.5 45.3 1.0 O2A A:ANP402 4.6 45.3 1.0 O3A A:ANP402 4.7 45.3 1.0 CA A:THR133 4.8 41.5 1.0 PA A:ANP402 4.8 45.3 1.0 CG2 A:THR164 4.9 54.4 1.0 CB A:THR164 4.9 54.4 1.0 CG A:GLU162 4.9 55.8 1.0

Calcium binding site 2 out of 3 in the Human DMC1 Pre-Synaptic Complexes


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Human DMC1 Pre-Synaptic Complexes within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca401 b:30.0 occ:1.00 O1G B:ANP402 1.7 30.7 1.0 OE2 B:GLU162 2.5 39.6 1.0 O1B B:ANP402 2.7 30.7 1.0 CG2 B:THR133 2.7 25.4 1.0 PG B:ANP402 3.1 30.7 1.0 N3B B:ANP402 3.7 30.7 1.0 CD B:GLU162 3.7 39.6 1.0 PB B:ANP402 3.7 30.7 1.0 O2G B:ANP402 3.8 30.7 1.0 OG1 B:THR133 3.9 25.4 1.0 CB B:THR133 3.9 25.4 1.0 O3G B:ANP402 4.2 30.7 1.0 OE1 B:GLU162 4.3 39.6 1.0 OG1 B:THR164 4.3 34.1 1.0 O2B B:ANP402 4.4 30.7 1.0 N B:THR133 4.5 25.4 1.0 O1A B:ANP402 4.6 30.7 1.0 CA B:THR133 4.8 25.4 1.0 CG B:GLU162 4.8 39.6 1.0 O3A B:ANP402 5.0 30.7 1.0 CG2 B:THR164 5.0 34.1 1.0

Calcium binding site 3 out of 3 in the Human DMC1 Pre-Synaptic Complexes


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Human DMC1 Pre-Synaptic Complexes within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca401 b:30.0 occ:1.00 O1G C:ANP402 1.8 31.4 1.0 CG2 C:THR133 2.5 35.7 1.0 OE2 C:GLU162 2.6 30.9 1.0 O1B C:ANP402 2.8 31.4 1.0 PG C:ANP402 3.2 31.4 1.0 CB C:THR133 3.7 35.7 1.0 OG1 C:THR133 3.7 35.7 1.0 CD C:GLU162 3.7 30.9 1.0 N3B C:ANP402 3.7 31.4 1.0 PB C:ANP402 3.9 31.4 1.0 O2G C:ANP402 4.0 31.4 1.0 OG1 C:THR164 4.0 24.3 1.0 O3G C:ANP402 4.2 31.4 1.0 OE1 C:GLU162 4.4 30.9 1.0 N C:THR133 4.4 35.7 1.0 O1A C:ANP402 4.6 31.4 1.0 O2B C:ANP402 4.6 31.4 1.0 CA C:THR133 4.7 35.7 1.0 CB C:THR164 4.7 24.3 1.0 CG2 C:THR164 4.8 24.3 1.0 CG C:GLU162 4.8 30.9 1.0 OD2 C:ASP223 4.9 24.1 1.0

S.C.Luo, H.Y.Yeh. Identification of Fidelity-Governing Factors in Human Recombinases DMC1 and RAD51 From Cryo-Em Structures Nat Commun 2020.
ISSN: ESSN 2041-1723