Calcium in PDB 7cec: Structure of ALPHA6BETA1 Integrin in Complex with Laminin-511

The structure of Structure of ALPHA6BETA1 Integrin in Complex with Laminin-511 also contains other interesting chemical elements:

Manganese

(Mn)

3 atoms

The binding sites of Calcium atom in the Structure of ALPHA6BETA1 Integrin in Complex with Laminin-511 (pdb code 7cec). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Structure of ALPHA6BETA1 Integrin in Complex with Laminin-511, PDB code: 7cec:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Structure of ALPHA6BETA1 Integrin in Complex with Laminin-511


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of ALPHA6BETA1 Integrin in Complex with Laminin-511 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1001 b:141.4 occ:1.00 OD1 A:ASN303 2.2 120.4 1.0 ND2 A:ASN303 2.3 120.4 1.0 OD1 A:ASP305 2.4 123.1 1.0 OD1 A:ASP309 2.4 129.8 1.0 O A:TRP307 2.5 122.7 1.0 OD1 A:ASP301 2.5 128.5 1.0 CG A:ASN303 2.5 120.4 1.0 OD2 A:ASP305 2.5 123.1 1.0 OD2 A:ASP309 2.6 129.8 1.0 CG A:ASP305 2.7 123.1 1.0 CG A:ASP309 2.8 129.8 1.0 CB A:ASN333 3.6 138.4 1.0 C A:TRP307 3.6 122.7 1.0 CG A:ASP301 3.7 128.5 1.0 O A:ASN333 3.9 138.4 1.0 CB A:ASN303 4.0 120.4 1.0 N A:ASN333 4.1 138.4 1.0 CB A:ASP305 4.1 123.1 1.0 CB A:TRP307 4.1 122.7 1.0 N A:ASP309 4.2 129.8 1.0 CB A:ASP309 4.2 129.8 1.0 CA A:ASN333 4.3 138.4 1.0 CA A:TRP307 4.3 122.7 1.0 N A:ASN303 4.4 120.4 1.0 OD2 A:ASP301 4.5 128.5 1.0 C A:GLN308 4.5 124.8 1.0 CA A:ASP301 4.5 128.5 1.0 N A:TRP307 4.6 122.7 1.0 C A:ASN333 4.6 138.4 1.0 N A:ASP305 4.6 123.1 1.0 N A:GLN308 4.6 124.8 1.0 N A:LEU302 4.7 124.2 1.0 CA A:ASP309 4.7 129.8 1.0 CB A:ASP301 4.7 128.5 1.0 CA A:ASN303 4.8 120.4 1.0 SD A:MET332 4.8 123.7 1.0 C A:ASP301 4.8 128.5 1.0 CG A:ASN333 4.8 138.4 1.0 CA A:GLN308 4.8 124.8 1.0 CA A:ASP305 4.9 123.1 1.0

Calcium binding site 2 out of 4 in the Structure of ALPHA6BETA1 Integrin in Complex with Laminin-511


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of ALPHA6BETA1 Integrin in Complex with Laminin-511 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1002 b:123.1 occ:1.00 OD1 A:ASN365 2.2 119.0 1.0 OD1 A:ASP371 2.2 110.1 1.0 O A:TYR369 2.2 122.2 1.0 ND2 A:ASN365 2.2 119.0 1.0 OD2 A:ASP367 2.3 125.5 1.0 OD1 A:ASP367 2.3 125.5 1.0 OD2 A:ASP371 2.4 110.1 1.0 OD1 A:ASP363 2.5 117.7 1.0 CG A:ASN365 2.5 119.0 1.0 CG A:ASP367 2.6 125.5 1.0 CG A:ASP371 2.6 110.1 1.0 C A:TYR369 3.4 122.2 1.0 CG A:ASP363 3.6 117.7 1.0 CD2 A:HIS388 3.9 111.5 1.0 CB A:TYR369 4.0 122.2 1.0 CB A:ASP367 4.0 125.5 1.0 CB A:ASN365 4.0 119.0 1.0 CA A:TYR369 4.0 122.2 1.0 CB A:ASP371 4.1 110.1 1.0 CA A:ASP363 4.2 117.7 1.0 N A:TYR369 4.2 122.2 1.0 NE2 A:HIS388 4.2 111.5 1.0 CG A:HIS388 4.3 111.5 1.0 C A:PRO370 4.3 118.3 1.0 OD2 A:ASP363 4.4 117.7 1.0 N A:PRO370 4.4 118.3 1.0 CB A:ASP363 4.4 117.7 1.0 N A:ASP367 4.5 125.5 1.0 N A:ASN365 4.5 119.0 1.0 O A:GLY389 4.5 116.7 1.0 N A:ASP371 4.5 110.1 1.0 O A:PRO370 4.5 118.3 1.0 CA A:PRO370 4.6 118.3 1.0 CA A:ASN365 4.8 119.0 1.0 C A:ASP363 4.8 117.7 1.0 CA A:ASP367 4.8 125.5 1.0 CA A:ASP371 4.8 110.1 1.0 N A:ILE364 4.8 113.3 1.0 CE1 A:HIS388 4.8 111.5 1.0 CB A:HIS388 4.8 111.5 1.0 ND1 A:HIS388 4.9 111.5 1.0 N A:GLY389 4.9 116.7 1.0 N A:GLN366 4.9 122.4 1.0 O A:GLY362 4.9 114.0 1.0

Calcium binding site 3 out of 4 in the Structure of ALPHA6BETA1 Integrin in Complex with Laminin-511


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of ALPHA6BETA1 Integrin in Complex with Laminin-511 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1003 b:127.1 occ:1.00 OD1 A:ASP420 2.3 131.5 1.0 O A:TYR424 2.4 119.7 1.0 OD1 A:ASP418 2.5 125.3 1.0 OG A:SER441 2.6 132.6 1.0 OD1 A:ASN422 2.7 121.0 1.0 OD1 A:ASP426 2.7 109.6 1.0 OD2 A:ASP426 2.9 109.6 1.0 CG A:ASP426 3.0 109.6 1.0 CG A:ASP418 3.1 125.3 1.0 CB A:ASP418 3.1 125.3 1.0 CA A:ASP418 3.3 125.3 1.0 CG A:ASP420 3.4 131.5 1.0 C A:TYR424 3.5 119.7 1.0 CG A:ASN422 3.6 121.0 1.0 N A:ASP426 3.7 109.6 1.0 CB A:SER441 3.8 132.6 1.0 C A:ASP418 3.9 125.3 1.0 N A:ASP420 3.9 131.5 1.0 N A:LEU419 4.0 127.4 1.0 CB A:ASP426 4.0 109.6 1.0 C A:PRO425 4.1 115.0 1.0 CB A:ASP420 4.1 131.5 1.0 OD2 A:ASP418 4.1 125.3 1.0 CA A:ASP426 4.1 109.6 1.0 N A:TYR424 4.2 119.7 1.0 CA A:TYR424 4.2 119.7 1.0 ND2 A:ASN422 4.3 121.0 1.0 CB A:TYR424 4.4 119.7 1.0 CA A:ASP420 4.4 131.5 1.0 OD2 A:ASP420 4.4 131.5 1.0 CA A:PRO425 4.5 115.0 1.0 CB A:ASN422 4.5 121.0 1.0 O A:SER441 4.5 132.6 1.0 N A:SER441 4.5 132.6 1.0 N A:PRO425 4.6 115.0 1.0 N A:ASN422 4.6 121.0 1.0 O A:PRO425 4.6 115.0 1.0 N A:ASP418 4.7 125.3 1.0 O A:ASP418 4.7 125.3 1.0 N A:ARG421 4.7 130.5 1.0 O A:MET417 4.7 111.2 1.0 C A:ASP420 4.8 131.5 1.0 CA A:SER441 4.8 132.6 1.0 C A:LEU419 4.9 127.4 1.0

Calcium binding site 4 out of 4 in the Structure of ALPHA6BETA1 Integrin in Complex with Laminin-511


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of ALPHA6BETA1 Integrin in Complex with Laminin-511 within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca3401 b:200.4 occ:1.00 OD2 C:ASP2793 2.7 209.3 1.0 OE1 C:GLU2864 2.7 201.5 1.0 OD2 C:ASP3219 2.7 195.8 1.0 O C:LEU2810 2.7 197.3 1.0 O C:LEU2866 2.7 188.1 1.0 OD1 C:ASN2868 2.7 191.2 1.0 CG C:ASN2868 3.1 191.2 1.0 CB C:GLU2864 3.1 201.5 1.0 ND2 C:ASN2868 3.3 191.2 1.0 CD C:GLU2864 3.5 201.5 1.0 C C:LEU2810 3.5 197.3 1.0 CG C:ASP3219 3.6 195.8 1.0 CG C:ASP2793 3.7 209.3 1.0 C C:LEU2866 3.8 188.1 1.0 CG C:GLU2864 3.8 201.5 1.0 CB C:LEU2810 3.9 197.3 1.0 CB C:ASP3219 3.9 195.8 1.0 CA C:LEU2810 4.1 197.3 1.0 CA C:GLU2864 4.1 201.5 1.0 CB C:ASN2868 4.1 191.2 1.0 N C:ASN2868 4.1 191.2 1.0 OD1 C:ASP2793 4.2 209.3 1.0 N C:LEU2866 4.3 188.1 1.0 C C:GLU2864 4.4 201.5 1.0 OE2 C:GLU2864 4.5 201.5 1.0 CA C:LEU2866 4.5 188.1 1.0 N C:GLY2811 4.5 198.1 1.0 O C:GLU2864 4.6 201.5 1.0 N C:LEU2867 4.8 192.6 1.0 OD1 C:ASP3219 4.8 195.8 1.0 CA C:ASN2868 4.8 191.2 1.0 CB C:LEU2866 4.8 188.1 1.0 CA C:GLY2811 4.8 198.1 1.0 CB C:ASP2793 4.9 209.3 1.0 CA C:LEU2867 5.0 192.6 1.0 N C:GLY2865 5.0 192.2 1.0

T.Arimori, N.Miyazaki, M.Takizawa, Y.Taniguchi, C.Cabanas, K.Sekiguchi, J.Takagi. Structural Mechanism of Laminin-511 Recognition By ALPHA6BETA1 Integrin To Be Published.