Calcium in PDB 7cz2: The Complex Structure of MSMEG_1954-Adp From Mycobacterium Smegmatis

The structure of The Complex Structure of MSMEG_1954-Adp From Mycobacterium Smegmatis, PDB code: 7cz2 was solved by Q.Zhang, Z.H.Rao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.66 / 1.80
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	83.65, 83.65, 100.76, 90, 90, 120
R / Rfree (%)	19.1 / 22.4

The binding sites of Calcium atom in the The Complex Structure of MSMEG_1954-Adp From Mycobacterium Smegmatis (pdb code 7cz2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the The Complex Structure of MSMEG_1954-Adp From Mycobacterium Smegmatis, PDB code: 7cz2:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the The Complex Structure of MSMEG_1954-Adp From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Complex Structure of MSMEG_1954-Adp From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:13.6 occ:1.00 O2B A:ADP501 2.3 19.2 1.0 O A:HOH701 2.4 16.9 1.0 O A:HOH751 2.5 25.1 1.0 OD1 A:ASP299 2.5 14.3 1.0 OD2 A:ASP299 2.5 14.4 1.0 O A:HOH758 2.5 21.7 1.0 O A:HOH687 2.6 25.1 1.0 CG A:ASP299 2.8 14.3 1.0 PB A:ADP501 3.5 17.7 1.0 O3B A:ADP501 3.6 22.4 1.0 CA A:CA503 4.0 12.0 1.0 CB A:ASP299 4.3 13.0 1.0 OD2 A:ASP281 4.3 16.7 1.0 O1B A:ADP501 4.4 20.6 1.0 OE1 A:GLU199 4.5 21.2 1.0 CA A:GLY301 4.5 16.4 1.0 N A:GLY301 4.6 14.8 1.0 OE2 A:GLU199 4.7 34.6 1.0 O A:HOH738 4.7 13.9 1.0 O3A A:ADP501 4.7 16.4 1.0 OG A:SER134 4.7 23.1 1.0 O A:HOH632 4.9 24.4 1.0 NZ A:LYS152 4.9 17.4 1.0 CD A:GLU199 5.0 27.0 1.0 OE1 A:GLU205 5.0 26.5 1.0

Calcium binding site 2 out of 2 in the The Complex Structure of MSMEG_1954-Adp From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Complex Structure of MSMEG_1954-Adp From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:12.0 occ:1.00 O1A A:ADP501 2.3 11.4 1.0 OD2 A:ASP299 2.3 14.4 1.0 O A:HOH632 2.4 24.4 1.0 O A:HOH738 2.4 13.9 1.0 OD1 A:ASN286 2.5 11.1 1.0 O2B A:ADP501 2.5 19.2 1.0 O A:HOH771 2.6 17.5 1.0 CG A:ASP299 3.2 14.3 1.0 CG A:ASN286 3.5 11.9 1.0 PA A:ADP501 3.5 13.8 1.0 PB A:ADP501 3.5 17.7 1.0 CB A:ASP299 3.6 13.0 1.0 ND2 A:ASN286 3.8 12.8 1.0 O3A A:ADP501 3.8 16.4 1.0 O1B A:ADP501 3.9 20.6 1.0 CA A:CA502 4.0 13.6 1.0 OD1 A:ASP299 4.3 14.3 1.0 OD2 A:ASP281 4.3 16.7 1.0 O2A A:ADP501 4.3 12.5 1.0 O5' A:ADP501 4.7 12.6 1.0 O3' A:ADP501 4.7 14.0 1.0 CB A:ASN286 4.8 11.5 1.0 O3B A:ADP501 4.9 22.4 1.0 C5' A:ADP501 4.9 11.7 1.0 O A:HOH758 4.9 21.7 1.0

Q.Zhang, Z.H.Rao. Conformational Changes in A Macrolide Antibiotic Binding Protein From Mycobacterium Smegmatis Upon Adp Binding To Be Published.