Calcium in PDB 7d4q: Structure of Human TRPC5 in Complex with Hc-070

Other elements in 7d4q:

The structure of Structure of Human TRPC5 in Complex with Hc-070 also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms
Zinc (Zn) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Human TRPC5 in Complex with Hc-070 (pdb code 7d4q). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Structure of Human TRPC5 in Complex with Hc-070, PDB code: 7d4q:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 7d4q

Go back to Calcium Binding Sites List in 7d4q
Calcium binding site 1 out of 4 in the Structure of Human TRPC5 in Complex with Hc-070


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Human TRPC5 in Complex with Hc-070 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca805

b:138.1
occ:1.00
OD1 A:ASN436 2.6 149.7 1.0
OD2 A:ASP439 2.8 140.2 1.0
OE1 A:GLU418 3.2 146.0 1.0
OE1 A:GLU421 3.5 160.3 1.0
NH2 A:ARG492 3.5 116.5 1.0
CG A:ASN436 3.8 151.3 1.0
CD A:GLU418 3.9 149.6 1.0
OE2 A:GLU418 4.0 148.1 1.0
CG A:ASP439 4.0 133.5 1.0
CD A:GLU421 4.3 167.4 1.0
OE2 A:GLU421 4.3 169.0 1.0
OD2 A:ASP433 4.5 159.2 1.0
ND2 A:ASN436 4.7 157.7 1.0
CA A:ASN436 4.7 138.2 1.0
CB A:ASP439 4.7 127.2 1.0
CB A:ASN436 4.8 145.9 1.0
CZ A:ARG492 4.8 113.4 1.0
OD1 A:ASP439 4.9 132.2 1.0
N A:ASN436 5.0 139.5 1.0

Calcium binding site 2 out of 4 in 7d4q

Go back to Calcium Binding Sites List in 7d4q
Calcium binding site 2 out of 4 in the Structure of Human TRPC5 in Complex with Hc-070


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Human TRPC5 in Complex with Hc-070 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca805

b:138.1
occ:1.00
OD1 B:ASN436 2.6 149.7 1.0
OD2 B:ASP439 2.8 140.2 1.0
OE1 B:GLU418 3.2 146.0 1.0
OE1 B:GLU421 3.5 160.3 1.0
NH2 B:ARG492 3.5 116.5 1.0
CG B:ASN436 3.8 151.3 1.0
CD B:GLU418 3.9 149.6 1.0
OE2 B:GLU418 4.0 148.1 1.0
CG B:ASP439 4.0 133.5 1.0
CD B:GLU421 4.3 167.4 1.0
OE2 B:GLU421 4.3 169.0 1.0
OD2 B:ASP433 4.5 159.2 1.0
ND2 B:ASN436 4.7 157.7 1.0
CA B:ASN436 4.7 138.2 1.0
CB B:ASP439 4.7 127.2 1.0
CB B:ASN436 4.8 145.9 1.0
CZ B:ARG492 4.8 113.4 1.0
OD1 B:ASP439 4.9 132.2 1.0
N B:ASN436 5.0 139.5 1.0

Calcium binding site 3 out of 4 in 7d4q

Go back to Calcium Binding Sites List in 7d4q
Calcium binding site 3 out of 4 in the Structure of Human TRPC5 in Complex with Hc-070


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Human TRPC5 in Complex with Hc-070 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca805

b:138.1
occ:1.00
OD1 C:ASN436 2.6 149.7 1.0
OD2 C:ASP439 2.8 140.2 1.0
OE1 C:GLU418 3.2 146.0 1.0
OE1 C:GLU421 3.5 160.3 1.0
NH2 C:ARG492 3.5 116.5 1.0
CG C:ASN436 3.8 151.3 1.0
CD C:GLU418 3.9 149.6 1.0
OE2 C:GLU418 4.0 148.1 1.0
CG C:ASP439 4.0 133.5 1.0
CD C:GLU421 4.3 167.4 1.0
OE2 C:GLU421 4.3 169.0 1.0
OD2 C:ASP433 4.5 159.2 1.0
ND2 C:ASN436 4.7 157.7 1.0
CA C:ASN436 4.7 138.2 1.0
CB C:ASP439 4.7 127.2 1.0
CB C:ASN436 4.8 145.9 1.0
CZ C:ARG492 4.8 113.4 1.0
OD1 C:ASP439 4.9 132.2 1.0
N C:ASN436 5.0 139.5 1.0

Calcium binding site 4 out of 4 in 7d4q

Go back to Calcium Binding Sites List in 7d4q
Calcium binding site 4 out of 4 in the Structure of Human TRPC5 in Complex with Hc-070


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Human TRPC5 in Complex with Hc-070 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca805

b:138.1
occ:1.00
OD1 D:ASN436 2.6 149.7 1.0
OD2 D:ASP439 2.8 140.2 1.0
OE1 D:GLU418 3.2 146.0 1.0
OE1 D:GLU421 3.5 160.3 1.0
NH2 D:ARG492 3.5 116.5 1.0
CG D:ASN436 3.8 151.3 1.0
CD D:GLU418 3.9 149.6 1.0
OE2 D:GLU418 4.0 148.1 1.0
CG D:ASP439 4.0 133.5 1.0
CD D:GLU421 4.3 167.4 1.0
OE2 D:GLU421 4.3 169.0 1.0
OD2 D:ASP433 4.5 159.2 1.0
ND2 D:ASN436 4.7 157.7 1.0
CA D:ASN436 4.7 138.2 1.0
CB D:ASP439 4.7 127.2 1.0
CB D:ASN436 4.8 145.9 1.0
CZ D:ARG492 4.8 113.4 1.0
OD1 D:ASP439 4.9 132.2 1.0
N D:ASN436 5.0 139.5 1.0

Reference:

L.Chen, K.Song, M.Wei, W.Guo. Structure of Human TRPC5 in Complex with Hc-070 To Be Published.
Page generated: Sat Apr 17 14:08:26 2021

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