Calcium in PDB 7d87: Crystal Structure of Zebrafish PHF14-Pzp in Complex with H3(1-25)

The structure of Crystal Structure of Zebrafish PHF14-Pzp in Complex with H3(1-25), PDB code: 7d87 was solved by H.T.Li, S.P.Zheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.21 / 2.11
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	41.921, 151.019, 81.84, 90, 90, 90
R / Rfree (%)	16.5 / 20.4

The structure of Crystal Structure of Zebrafish PHF14-Pzp in Complex with H3(1-25) also contains other interesting chemical elements:

Zinc

(Zn)

5 atoms

The binding sites of Calcium atom in the Crystal Structure of Zebrafish PHF14-Pzp in Complex with H3(1-25) (pdb code 7d87). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Zebrafish PHF14-Pzp in Complex with H3(1-25), PDB code: 7d87:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Zebrafish PHF14-Pzp in Complex with H3(1-25)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Zebrafish PHF14-Pzp in Complex with H3(1-25) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca506 b:49.7 occ:1.00 O A:PHE457 2.4 26.6 1.0 O A:HOH652 2.4 26.7 1.0 O A:HOH645 2.5 28.8 1.0 OD2 A:ASP455 2.6 32.3 1.0 O A:HOH636 2.6 30.2 1.0 O A:HOH625 2.6 32.0 1.0 CG A:ASP455 3.4 33.3 1.0 C A:PHE457 3.5 33.0 1.0 OD1 A:ASP455 3.6 26.3 1.0 O A:TYR377 3.8 26.6 1.0 N A:PHE458 4.3 24.4 1.0 CA A:PHE458 4.3 23.8 1.0 CB A:PHE457 4.4 28.4 1.0 O A:HOH629 4.4 31.4 1.0 CA A:PHE457 4.4 29.2 1.0 O A:HOH635 4.4 35.7 1.0 OD2 A:ASP425 4.5 33.4 1.0 C A:TYR377 4.6 30.8 1.0 CA A:TYR377 4.7 24.8 1.0 N A:PHE457 4.8 25.0 1.0 CB A:ASP455 4.8 23.2 1.0 CD2 A:TYR377 4.9 23.1 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Zebrafish PHF14-Pzp in Complex with H3(1-25)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Zebrafish PHF14-Pzp in Complex with H3(1-25) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca507 b:56.2 occ:1.00 O A:HOH681 2.4 36.2 1.0 O A:VAL381 2.4 35.9 1.0 O A:ALA375 2.5 32.7 1.0 O A:VAL378 2.7 30.9 1.0 O A:HOH680 2.9 66.7 1.0 O A:LEU376 3.0 33.2 1.0 C A:VAL381 3.5 39.9 1.0 C A:LEU376 3.5 28.2 1.0 C A:ALA375 3.7 31.4 1.0 C A:VAL378 3.8 26.7 1.0 N A:VAL381 4.0 35.0 1.0 CA A:LEU376 4.0 30.5 1.0 CA A:VAL381 4.0 33.9 1.0 CB A:VAL381 4.1 38.6 1.0 N A:VAL378 4.1 27.5 1.0 O A:HOH625 4.2 32.0 1.0 N A:TYR377 4.3 27.0 1.0 N A:LEU376 4.3 27.0 1.0 C A:TYR377 4.4 30.8 1.0 CA A:VAL378 4.6 24.1 1.0 N A:ALA382 4.6 32.2 1.0 N A:PRO379 4.7 25.9 1.0 CA A:PRO379 4.7 32.2 1.0 CA A:TYR377 4.8 24.8 1.0 CA A:ALA375 4.8 30.6 1.0 N A:GLY380 4.9 34.5 1.0 C A:PRO379 4.9 30.2 1.0 CG1 A:VAL381 4.9 29.7 1.0 CA A:ALA382 5.0 44.7 1.0 O A:TYR377 5.0 26.6 1.0

H.T.Li, S.P.Zheng. Crystal Structure of Zebrafish PHF14-Pzp in Complex with H3(1-25) To Be Published.