Calcium in PDB 7d8a: Crystal Structure of H3(1-13)/PHF14-Pzp Fusion Protein

The structure of Crystal Structure of H3(1-13)/PHF14-Pzp Fusion Protein, PDB code: 7d8a was solved by H.T.Li, S.P.Zheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.71 / 2.00
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	41.781, 150.423, 81.42, 90, 90, 90
R / Rfree (%)	17.7 / 21.2

The structure of Crystal Structure of H3(1-13)/PHF14-Pzp Fusion Protein also contains other interesting chemical elements:

Zinc

(Zn)

5 atoms

The binding sites of Calcium atom in the Crystal Structure of H3(1-13)/PHF14-Pzp Fusion Protein (pdb code 7d8a). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of H3(1-13)/PHF14-Pzp Fusion Protein, PDB code: 7d8a:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of H3(1-13)/PHF14-Pzp Fusion Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of H3(1-13)/PHF14-Pzp Fusion Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca506 b:38.2 occ:1.00 O A:PHE457 2.3 22.4 1.0 O A:HOH651 2.3 15.8 1.0 O A:HOH663 2.5 21.2 1.0 OD2 A:ASP455 2.5 25.2 1.0 O A:HOH637 2.5 25.6 1.0 O A:HOH654 2.6 17.9 1.0 CG A:ASP455 3.3 23.9 1.0 C A:PHE457 3.4 21.4 1.0 OD1 A:ASP455 3.4 22.6 1.0 O A:TYR377 3.8 25.9 1.0 N A:PHE458 4.3 22.6 1.0 CB A:PHE457 4.3 25.1 1.0 CA A:PHE458 4.3 18.3 1.0 CA A:PHE457 4.3 20.3 1.0 O A:HOH633 4.3 17.8 1.0 O A:HOH636 4.4 26.6 1.0 OD2 A:ASP425 4.6 22.9 1.0 C A:TYR377 4.7 27.9 1.0 CB A:ASP455 4.7 18.0 1.0 N A:PHE457 4.7 21.7 1.0 CA A:TYR377 4.7 27.3 1.0 CD1 A:TYR377 4.9 17.8 1.0 O A:HOH707 5.0 45.2 1.0 CB A:PHE458 5.0 22.4 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of H3(1-13)/PHF14-Pzp Fusion Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of H3(1-13)/PHF14-Pzp Fusion Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca507 b:45.1 occ:1.00 O A:ALA375 2.4 22.8 1.0 O A:VAL381 2.4 31.9 1.0 O A:VAL378 2.7 21.9 1.0 O A:LEU376 2.9 23.5 1.0 O A:HOH621 3.2 50.6 1.0 C A:LEU376 3.4 23.1 1.0 C A:VAL381 3.5 30.0 1.0 C A:ALA375 3.6 25.7 1.0 C A:VAL378 3.8 20.1 1.0 CA A:LEU376 3.9 23.2 1.0 N A:VAL381 4.0 23.2 1.0 CB A:VAL381 4.0 25.2 1.0 CA A:VAL381 4.0 27.9 1.0 N A:VAL378 4.1 21.9 1.0 N A:TYR377 4.2 22.8 1.0 N A:LEU376 4.2 22.5 1.0 O A:HOH637 4.4 25.6 1.0 C A:TYR377 4.4 27.9 1.0 CA A:VAL378 4.5 22.9 1.0 N A:PRO379 4.6 19.7 1.0 N A:ALA382 4.6 27.1 1.0 CA A:PRO379 4.7 21.6 1.0 CA A:TYR377 4.7 27.3 1.0 CA A:ALA375 4.8 23.6 1.0 N A:GLY380 4.8 25.7 1.0 CG1 A:VAL381 4.8 27.4 1.0 C A:PRO379 4.9 22.9 1.0 O A:TYR377 5.0 25.9 1.0

H.T.Li, S.P.Zheng. Crystal Structure of H3(1-13)/PHF14-Pzp Fusion Protein To Be Published.