Calcium in PDB 7d8i: Crystal Structure of Nucleoside Phosphatase SA1684 Complex with Atp Analogue From Staphylococus Aureus

The structure of Crystal Structure of Nucleoside Phosphatase SA1684 Complex with Atp Analogue From Staphylococus Aureus, PDB code: 7d8i was solved by Z.Wang, X.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.45 / 1.62
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	49.298, 36.478, 56.074, 90, 108.52, 90
R / Rfree (%)	17.7 / 19.6

The binding sites of Calcium atom in the Crystal Structure of Nucleoside Phosphatase SA1684 Complex with Atp Analogue From Staphylococus Aureus (pdb code 7d8i). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Nucleoside Phosphatase SA1684 Complex with Atp Analogue From Staphylococus Aureus, PDB code: 7d8i:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Nucleoside Phosphatase SA1684 Complex with Atp Analogue From Staphylococus Aureus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Nucleoside Phosphatase SA1684 Complex with Atp Analogue From Staphylococus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:11.2 occ:1.00 OD1 A:ASN90 2.2 15.4 1.0 O1B A:AGS201 2.2 25.8 1.0 OD1 A:ASP110 2.3 20.1 1.0 O A:HOH330 2.4 12.2 1.0 OD2 A:ASP106 2.4 12.0 1.0 O A:HOH316 2.5 11.9 1.0 OD2 A:ASP110 2.6 19.1 1.0 CG A:ASP110 2.8 16.8 1.0 CG A:ASN90 3.3 14.4 1.0 CG A:ASP106 3.4 9.6 1.0 PB A:AGS201 3.6 21.9 1.0 OD1 A:ASP106 3.6 11.2 1.0 CB A:ASN90 4.0 13.6 1.0 CA A:CA203 4.0 11.8 1.0 O2B A:AGS201 4.0 27.7 1.0 O2G A:AGS201 4.1 20.6 1.0 CA A:ASN90 4.2 12.0 1.0 O A:HOH338 4.2 17.8 1.0 O A:HOH375 4.3 22.8 1.0 O A:LEU109 4.3 12.6 1.0 CB A:ASP110 4.3 14.1 1.0 O A:ASP108 4.4 12.6 1.0 O3G A:AGS201 4.4 16.6 1.0 ND2 A:ASN90 4.5 16.8 1.0 O3B A:AGS201 4.5 16.0 1.0 PG A:AGS201 4.6 16.5 1.0 O3A A:AGS201 4.6 24.1 1.0 CB A:ASP106 4.8 9.8 1.0 C A:ASP108 4.8 11.7 1.0 N A:ASP108 5.0 11.7 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Nucleoside Phosphatase SA1684 Complex with Atp Analogue From Staphylococus Aureus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Nucleoside Phosphatase SA1684 Complex with Atp Analogue From Staphylococus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca203 b:11.8 occ:1.00 OD2 A:ASP123 2.2 17.8 1.0 O3G A:AGS201 2.2 16.6 1.0 O A:ASP108 2.3 12.6 1.0 OE2 A:GLU126 2.4 22.8 1.0 OD2 A:ASP110 2.4 19.1 1.0 O A:HOH316 2.5 11.9 1.0 CG A:ASP123 3.2 18.1 1.0 C A:ASP108 3.4 11.7 1.0 CD A:GLU126 3.5 26.2 1.0 PG A:AGS201 3.5 16.5 1.0 CG A:ASP110 3.6 16.8 1.0 CB A:ASP123 3.6 15.4 1.0 O2G A:AGS201 3.8 20.6 1.0 CA A:ASP108 3.9 11.3 1.0 CA A:CA202 4.0 11.2 1.0 OE1 A:GLU126 4.1 33.7 1.0 OD1 A:ASP123 4.4 21.3 1.0 O1B A:AGS201 4.4 25.8 1.0 O3B A:AGS201 4.4 16.0 1.0 CB A:ASP110 4.4 14.1 1.0 OD1 A:ASP110 4.5 20.1 1.0 N A:LEU109 4.6 11.3 1.0 CG A:GLU126 4.7 19.5 1.0 O2B A:AGS201 4.7 27.7 1.0 O A:HOH302 4.7 22.9 1.0 O A:HOH330 4.7 12.2 1.0 PB A:AGS201 4.7 21.9 1.0 C A:LEU109 4.8 12.8 1.0 CB A:ASP108 4.9 11.5 1.0 OD1 A:ASP106 4.9 11.2 1.0 N A:ASP110 4.9 12.3 1.0 CB A:GLU126 4.9 17.2 1.0 N A:ASP108 5.0 11.7 1.0

Z.Wang, X.Li. Crystal Structure of Nucleoside Phosphatase SA1684 Complex with Atp Analogue From Staphylococus Aureus To Be Published.