Atomistry » Calcium » PDB 7d8i-7dn7 » 7dl7
Atomistry »
  Calcium »
    PDB 7d8i-7dn7 »
      7dl7 »

Calcium in PDB 7dl7: The Wild-Type Structure of 3,5-Dahdhcca

Enzymatic activity of The Wild-Type Structure of 3,5-Dahdhcca

All present enzymatic activity of The Wild-Type Structure of 3,5-Dahdhcca:
1.4.1.11;

Protein crystallography data

The structure of The Wild-Type Structure of 3,5-Dahdhcca, PDB code: 7dl7 was solved by N.Liu, L.Wu, D.M.Zhu, J.H.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.98 / 2.30
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 89.604, 89.889, 123.693, 87.33, 70.97, 80.56
R / Rfree (%) 22.6 / 25.7

Other elements in 7dl7:

The structure of The Wild-Type Structure of 3,5-Dahdhcca also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the The Wild-Type Structure of 3,5-Dahdhcca (pdb code 7dl7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the The Wild-Type Structure of 3,5-Dahdhcca, PDB code: 7dl7:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 7dl7

Go back to Calcium Binding Sites List in 7dl7
Calcium binding site 1 out of 2 in the The Wild-Type Structure of 3,5-Dahdhcca


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Wild-Type Structure of 3,5-Dahdhcca within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca405

b:59.9
occ:1.00
CB D:MET96 3.0 49.0 1.0
ND2 D:ASN47 3.0 58.5 1.0
C D:MET96 3.4 50.3 1.0
CB D:ASN47 3.5 46.9 1.0
O D:MET96 3.6 51.7 1.0
N D:PHE97 3.6 52.1 1.0
CA D:MET96 3.6 47.7 1.0
CG D:ASN47 3.7 55.9 1.0
CD1 D:ILE98 4.2 47.4 1.0
N D:MET96 4.2 47.3 1.0
O D:PHE97 4.2 47.0 1.0
CG D:MET96 4.2 57.4 1.0
CA D:PHE97 4.3 49.1 1.0
C D:PHE97 4.3 50.9 1.0
SD D:MET96 4.5 71.4 1.0
CD2 D:LEU173 4.5 48.2 1.0
O D:SER122 4.5 46.7 1.0
CA D:ASN47 4.7 51.0 1.0
N D:ASN47 4.8 47.7 1.0
CG1 D:ILE98 4.8 52.0 1.0
O D:ASN47 4.8 53.3 1.0
OD1 D:ASN47 4.9 55.5 1.0

Calcium binding site 2 out of 2 in 7dl7

Go back to Calcium Binding Sites List in 7dl7
Calcium binding site 2 out of 2 in the The Wild-Type Structure of 3,5-Dahdhcca


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Wild-Type Structure of 3,5-Dahdhcca within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca407

b:64.1
occ:1.00
CB G:MET96 2.9 44.3 1.0
ND2 G:ASN47 3.4 59.6 1.0
C G:MET96 3.4 46.6 1.0
N G:PHE97 3.5 43.2 1.0
CA G:MET96 3.7 51.0 1.0
O G:MET96 3.8 49.5 1.0
O G:PHE97 3.8 46.8 1.0
C G:PHE97 4.0 48.2 1.0
CB G:ASN47 4.1 54.8 1.0
CA G:PHE97 4.1 45.9 1.0
CD1 G:ILE98 4.1 54.5 1.0
CG G:ASN47 4.1 58.1 1.0
CG G:MET96 4.1 48.0 1.0
CG1 G:ILE98 4.3 44.0 1.0
SD G:MET96 4.4 64.5 1.0
O G:SER122 4.4 43.6 1.0
N G:MET96 4.5 46.9 1.0
N G:ILE98 4.7 50.0 1.0
CB G:ALA121 4.9 35.7 1.0
OG G:SER122 4.9 37.4 1.0

Reference:

N.Liu, L.Wu, J.Feng, X.Sheng, J.Li, X.Chen, J.Li, W.Liu, J.Zhou, Q.Wu, D.Zhu. Crystal Structures and Catalytic Mechanism of L-Erythro-3,5-Diaminohexanoate Dehydrogenase and Rational Engineering For Asymmetric Synthesis of Beta-Amino Acids. Angew.Chem.Int.Ed.Engl. V. 60 10203 2021.
ISSN: ESSN 1521-3773
PubMed: 33624917
DOI: 10.1002/ANIE.202017225
Page generated: Fri Nov 5 11:35:03 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy