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Calcium in PDB 7dlh: Crystallization of Cationic Peroxidase From Proso Millet and Identification of Its Phosphatase Active Sites

Protein crystallography data

The structure of Crystallization of Cationic Peroxidase From Proso Millet and Identification of Its Phosphatase Active Sites, PDB code: 7dlh was solved by X.D.Cui, T.F.Wang, K.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.64 / 1.79
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 56.298, 112.665, 111.585, 90, 90, 90
R / Rfree (%) 17.1 / 20.5

Other elements in 7dlh:

The structure of Crystallization of Cationic Peroxidase From Proso Millet and Identification of Its Phosphatase Active Sites also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms
Sodium (Na) 1 atom
Iron (Fe) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystallization of Cationic Peroxidase From Proso Millet and Identification of Its Phosphatase Active Sites (pdb code 7dlh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystallization of Cationic Peroxidase From Proso Millet and Identification of Its Phosphatase Active Sites, PDB code: 7dlh:

Calcium binding site 1 out of 1 in 7dlh

Go back to Calcium Binding Sites List in 7dlh
Calcium binding site 1 out of 1 in the Crystallization of Cationic Peroxidase From Proso Millet and Identification of Its Phosphatase Active Sites


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystallization of Cationic Peroxidase From Proso Millet and Identification of Its Phosphatase Active Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:10.3
occ:1.00
OD2 A:ASP231 2.3 9.2 1.0
O A:ILE237 2.4 7.6 1.0
OG1 A:THR234 2.4 7.3 1.0
O A:THR186 2.4 8.7 1.0
O A:THR234 2.4 12.9 1.0
OG1 A:THR186 2.6 8.4 1.0
OD1 A:ASP239 2.6 10.8 1.0
CG A:ASP231 3.3 8.4 1.0
C A:THR186 3.4 8.7 1.0
CG A:ASP239 3.4 12.1 1.0
C A:THR234 3.5 11.9 1.0
CB A:THR234 3.5 9.2 1.0
C A:ILE237 3.6 10.5 1.0
CB A:THR186 3.6 8.0 1.0
OD2 A:ASP239 3.7 12.8 1.0
CA A:THR186 3.8 6.7 1.0
CA A:THR234 3.9 6.4 1.0
CB A:ASP231 4.0 7.2 1.0
N A:ILE237 4.2 9.5 1.0
N A:ASP239 4.2 8.0 1.0
OD1 A:ASP231 4.3 12.2 1.0
N A:THR234 4.3 10.1 1.0
CA A:ILE237 4.3 9.9 1.0
CG2 A:THR186 4.4 6.6 1.0
CB A:LYS241 4.4 10.2 1.0
CB A:ILE237 4.6 13.3 1.0
N A:PHE238 4.6 8.7 1.0
N A:ILE187 4.6 8.3 1.0
N A:PRO235 4.6 11.7 1.0
O A:ASP239 4.7 10.8 1.0
CB A:ASP239 4.7 9.2 1.0
CA A:PHE238 4.7 7.9 1.0
CG2 A:THR234 4.8 10.0 1.0
CG A:LYS241 4.9 15.2 1.0
C A:PHE238 4.9 9.3 1.0
CG2 A:ILE187 4.9 8.4 1.0
CA A:ASP239 4.9 9.3 1.0
C A:PRO235 4.9 10.6 1.0
C A:ASP239 5.0 11.3 1.0
N A:LYS241 5.0 9.5 1.0
N A:TYR242 5.0 7.7 1.0

Reference:

X.D.Cui, T.F.Wang. Crystallization of Cationic Peroxidase From Proso Millet and Identification of Its Phosphatase Active Sites To Be Published.
Page generated: Fri Dec 17 08:17:58 2021

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