Calcium in PDB 7e1e: Lamprey Serum Virus-Like Lectin-Lsvl

The binding sites of Calcium atom in the Lamprey Serum Virus-Like Lectin-Lsvl (pdb code 7e1e). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Lamprey Serum Virus-Like Lectin-Lsvl, PDB code: 7e1e:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in the Lamprey Serum Virus-Like Lectin-Lsvl


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Lamprey Serum Virus-Like Lectin-Lsvl within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:68.8 occ:1.00 OD1 A:ASN279 2.4 58.6 1.0 OE2 A:GLU281 2.5 55.9 1.0 OE1 A:GLU293 2.5 63.5 1.0 OE1 A:GLU281 3.0 55.9 1.0 CD A:GLU281 3.1 55.9 1.0 OE1 A:GLU262 3.4 61.6 1.0 CD A:GLU293 3.4 63.5 1.0 CG A:ASN279 3.6 58.6 1.0 OE2 A:GLU293 3.7 63.5 1.0 CA A:ASN279 4.1 58.6 1.0 CB A:ASN261 4.3 60.2 1.0 CB A:ASN279 4.3 58.6 1.0 O A:CYS278 4.5 63.3 1.0 CG A:GLU281 4.5 55.9 1.0 CD A:GLU262 4.6 61.6 1.0 ND2 A:ASN279 4.6 58.6 1.0 NE2 A:GLN298 4.7 58.0 1.0 CG A:GLU293 4.8 63.5 1.0

Calcium binding site 2 out of 6 in the Lamprey Serum Virus-Like Lectin-Lsvl


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Lamprey Serum Virus-Like Lectin-Lsvl within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:32.5 occ:1.00 O A:GLY112 2.2 42.8 1.0 O A:HIS101 2.3 37.6 1.0 OD2 A:ASP301 2.3 42.9 1.0 OD1 A:ASP150 2.3 36.6 1.0 OD2 A:ASP150 2.5 36.6 1.0 CG A:ASP150 2.8 36.6 1.0 C A:HIS101 3.4 37.6 1.0 C A:GLY112 3.4 42.8 1.0 CG A:ASP301 3.5 42.9 1.0 CA A:GLU102 4.1 42.4 1.0 CA A:ASP113 4.2 42.7 1.0 N A:GLU102 4.2 42.4 1.0 N A:ASP113 4.2 42.7 1.0 CB A:ASP150 4.2 36.6 1.0 N A:ASN103 4.3 42.8 1.0 CB A:ASP301 4.4 42.9 1.0 CA A:HIS101 4.4 37.6 1.0 N A:ARG114 4.4 37.0 1.0 CA A:GLY112 4.4 42.8 1.0 OD1 A:ASP301 4.4 42.9 1.0 OD1 A:ASN103 4.4 42.8 1.0 OD1 A:ASP149 4.5 39.3 1.0 ND1 A:HIS101 4.5 37.6 1.0 N A:HIS101 4.5 37.6 1.0 N A:ASP150 4.6 36.6 1.0 CB A:HIS101 4.6 37.6 1.0 C A:GLU102 4.7 42.4 1.0 C A:ASP113 4.8 42.7 1.0 OE1 A:GLU102 4.8 42.4 1.0 OD1 A:ASP113 4.9 42.7 1.0 CA A:ASP150 4.9 36.6 1.0 CD1 A:TRP115 4.9 36.0 1.0 NH1 A:ARG114 5.0 37.0 1.0

Calcium binding site 3 out of 6 in the Lamprey Serum Virus-Like Lectin-Lsvl


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Lamprey Serum Virus-Like Lectin-Lsvl within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca401 b:65.4 occ:1.00 OE2 B:GLU281 2.3 66.8 1.0 OD1 B:ASN279 2.4 69.9 1.0 OE1 B:GLU293 2.4 72.9 1.0 CD B:GLU281 3.1 66.8 1.0 CD B:GLU293 3.2 72.9 1.0 OE1 B:GLU281 3.3 66.8 1.0 OE2 B:GLU293 3.3 72.9 1.0 CG B:ASN279 3.6 69.9 1.0 OE1 B:GLU262 3.7 71.4 1.0 CA B:ASN279 4.3 69.9 1.0 CB B:ASN279 4.4 69.9 1.0 NE2 B:GLN298 4.5 66.1 1.0 CG B:GLU281 4.5 66.8 1.0 ND2 B:ASN279 4.5 69.9 1.0 CG B:GLU293 4.7 72.9 1.0 CB B:ASN261 4.7 70.8 1.0 NE2 B:HIS282 4.8 65.3 1.0 CD B:GLU262 4.9 71.4 1.0 O B:CYS278 4.9 75.8 1.0

Calcium binding site 4 out of 6 in the Lamprey Serum Virus-Like Lectin-Lsvl


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Lamprey Serum Virus-Like Lectin-Lsvl within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca402 b:46.0 occ:1.00 O B:GLY112 2.2 47.3 1.0 O B:HIS101 2.3 43.9 1.0 OD1 B:ASP150 2.3 41.1 1.0 OD2 B:ASP301 2.4 49.7 1.0 OD2 B:ASP150 2.5 41.1 1.0 CG B:ASP150 2.7 41.1 1.0 C B:HIS101 3.4 43.9 1.0 C B:GLY112 3.4 47.3 1.0 CG B:ASP301 3.6 49.7 1.0 CA B:GLU102 4.1 48.6 1.0 N B:GLU102 4.2 48.6 1.0 CB B:ASP150 4.2 41.1 1.0 CA B:ASP113 4.2 47.1 1.0 N B:ASP113 4.2 47.1 1.0 N B:ASN103 4.2 48.6 1.0 OD1 B:ASP149 4.4 44.5 1.0 CA B:HIS101 4.4 43.9 1.0 CA B:GLY112 4.4 47.3 1.0 OD1 B:ASN103 4.4 48.6 1.0 N B:ARG114 4.4 43.0 1.0 CB B:ASP301 4.5 49.7 1.0 ND1 B:HIS101 4.5 43.9 1.0 OD1 B:ASP301 4.5 49.7 1.0 N B:ASP150 4.5 41.1 1.0 N B:HIS101 4.5 43.9 1.0 CB B:HIS101 4.6 43.9 1.0 C B:GLU102 4.7 48.6 1.0 CA B:ASP150 4.8 41.1 1.0 C B:ASP113 4.9 47.1 1.0 OE1 B:GLU102 4.9 48.6 1.0 NH1 B:ARG114 4.9 43.0 1.0 OD1 B:ASP113 4.9 47.1 1.0 CD1 B:TRP115 5.0 44.5 1.0 CG B:ASN103 5.0 48.6 1.0

Calcium binding site 5 out of 6 in the Lamprey Serum Virus-Like Lectin-Lsvl


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Lamprey Serum Virus-Like Lectin-Lsvl within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca401 b:70.8 occ:1.00 OE1 C:GLU293 2.4 64.0 1.0 OD1 C:ASN279 2.5 61.7 1.0 OE2 C:GLU281 2.6 57.8 1.0 OE1 C:GLU281 3.1 57.8 1.0 CD C:GLU281 3.2 57.8 1.0 OE1 C:GLU262 3.2 64.3 1.0 CD C:GLU293 3.4 64.0 1.0 OE2 C:GLU293 3.6 64.0 1.0 CG C:ASN279 3.7 61.7 1.0 CA C:ASN279 4.2 61.7 1.0 CB C:ASN261 4.2 63.3 1.0 CB C:ASN279 4.4 61.7 1.0 CD C:GLU262 4.5 64.3 1.0 O C:CYS278 4.5 67.3 1.0 CG C:GLU281 4.6 57.8 1.0 ND2 C:ASN279 4.7 61.7 1.0 NE2 C:GLN298 4.7 60.1 1.0 CG C:GLU293 4.7 64.0 1.0

Calcium binding site 6 out of 6 in the Lamprey Serum Virus-Like Lectin-Lsvl


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Lamprey Serum Virus-Like Lectin-Lsvl within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca402 b:46.8 occ:1.00 O C:GLY112 2.2 45.4 1.0 O C:HIS101 2.3 45.8 1.0 OD1 C:ASP150 2.3 41.6 1.0 OD2 C:ASP301 2.3 46.4 1.0 OD2 C:ASP150 2.5 41.6 1.0 CG C:ASP150 2.7 41.6 1.0 C C:HIS101 3.4 45.8 1.0 C C:GLY112 3.4 45.4 1.0 CG C:ASP301 3.5 46.4 1.0 CA C:GLU102 4.1 50.0 1.0 CA C:ASP113 4.2 46.0 1.0 N C:GLU102 4.2 50.0 1.0 N C:ASP113 4.2 46.0 1.0 CB C:ASP150 4.2 41.6 1.0 N C:ASN103 4.3 51.5 1.0 N C:ARG114 4.4 41.3 1.0 CB C:ASP301 4.4 46.4 1.0 CA C:HIS101 4.4 45.8 1.0 CA C:GLY112 4.4 45.4 1.0 OD1 C:ASP301 4.4 46.4 1.0 OD1 C:ASP149 4.4 43.5 1.0 OD1 C:ASN103 4.4 51.5 1.0 N C:HIS101 4.5 45.8 1.0 ND1 C:HIS101 4.5 45.8 1.0 N C:ASP150 4.6 41.6 1.0 CB C:HIS101 4.6 45.8 1.0 C C:GLU102 4.7 50.0 1.0 C C:ASP113 4.8 46.0 1.0 OE1 C:GLU102 4.9 50.0 1.0 CA C:ASP150 4.9 41.6 1.0 OD1 C:ASP113 4.9 46.0 1.0 CD1 C:TRP115 4.9 39.1 1.0 NH1 C:ARG114 5.0 41.3 1.0

L.Qingwei, Y.Peng. Structure of Lamprey Serum Virus-Like Lectin with High Binding Capacity, Involved in Initiation and Regulation of Innate Immunity To Be Published.