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Calcium in PDB 7e9y: Crystal Structure of ELACCO1

Protein crystallography data

The structure of Crystal Structure of ELACCO1, PDB code: 7e9y was solved by Y.Wen, R.E.Campbell, M.J.Lemieux, Y.Nasu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.49 / 2.25
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 102.217, 104.983, 138.748, 90, 90, 90
R / Rfree (%) 14.7 / 18.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of ELACCO1 (pdb code 7e9y). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of ELACCO1, PDB code: 7e9y:

Calcium binding site 1 out of 1 in 7e9y

Go back to Calcium Binding Sites List in 7e9y
Calcium binding site 1 out of 1 in the Crystal Structure of ELACCO1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of ELACCO1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca601

b:9.6
occ:1.00
OD2 A:ASP444 2.1 14.8 1.0
OHN A:2OP602 2.3 10.3 1.0
O A:PHE445 2.3 11.5 1.0
O A:2OP602 2.4 10.7 1.0
OE1 A:GLN475 2.4 11.7 1.0
OD1 A:ASN137 2.4 10.6 1.0
HHN A:2OP602 2.7 12.4 1.0
CG A:ASP444 2.8 13.8 1.0
OD1 A:ASP444 2.9 20.3 1.0
C A:2OP602 3.2 12.3 1.0
CD A:GLN475 3.2 11.9 1.0
CA A:2OP602 3.3 13.2 1.0
HE22 A:GLN475 3.3 14.1 1.0
CG A:ASN137 3.3 10.5 1.0
HG3 A:PRO159 3.4 18.2 1.0
C A:PHE445 3.4 12.2 1.0
HD3 A:PRO159 3.5 13.7 1.0
NE2 A:GLN475 3.6 11.8 1.0
HA A:PHE445 3.7 13.7 1.0
HB3 A:ASN137 3.7 10.6 1.0
HH12 A:ARG157 3.7 11.1 1.0
HA A:2OP602 3.8 15.8 1.0
CA A:PHE445 4.0 11.4 1.0
CB A:ASN137 4.0 8.8 1.0
HE2 A:HIS474 4.0 19.1 1.0
HA A:VAL446 4.1 10.7 1.0
CG A:PRO159 4.2 15.1 1.0
HB2 A:ASN137 4.2 10.6 1.0
CD A:PRO159 4.2 11.4 1.0
ND2 A:ASN137 4.2 13.8 1.0
HB1 A:2OP602 4.2 17.9 1.0
N A:PHE445 4.2 13.8 1.0
HD21 A:ASN137 4.3 16.6 1.0
CB A:ASP444 4.3 13.8 1.0
CB A:2OP602 4.3 14.9 1.0
HB2 A:GLN475 4.3 14.6 1.0
HE21 A:GLN475 4.4 14.1 1.0
OD2 A:ASP478 4.4 15.5 1.0
HD2 A:HIS474 4.4 18.3 1.0
OXT A:2OP602 4.5 7.1 1.0
NH1 A:ARG157 4.5 9.3 1.0
HB3 A:ASP444 4.5 16.6 1.0
H A:PHE445 4.5 16.5 1.0
CG A:GLN475 4.5 9.2 1.0
C A:ASP444 4.6 17.8 1.0
N A:VAL446 4.6 8.5 1.0
HH11 A:ARG157 4.6 11.1 1.0
HD2 A:PRO159 4.6 13.7 1.0
HD1 A:PHE445 4.6 18.3 1.0
HB3 A:PRO159 4.7 14.6 1.0
NE2 A:HIS474 4.7 15.9 1.0
HG12 A:VAL446 4.7 18.9 1.0
HG3 A:GLN475 4.7 11.1 1.0
HB2 A:2OP602 4.7 17.9 1.0
HG2 A:PRO159 4.8 18.2 1.0
CA A:VAL446 4.8 8.9 1.0
CB A:GLN475 4.8 12.2 1.0
HB3 A:GLN475 4.8 14.6 1.0
CG A:ASP478 4.9 13.6 1.0
HB2 A:ASP444 4.9 16.6 1.0
CD2 A:HIS474 4.9 15.2 1.0
HD22 A:ASN137 4.9 16.6 1.0
HG21 A:ILE163 5.0 15.9 1.0

Reference:

Y.Nasu, C.Murphy-Royal, Y.Wen, J.N.Haidey, R.S.Molina, A.Aggarwal, S.Zhang, Y.Kamijo, M.E.Paquet, K.Podgorski, M.Drobizhev, J.S.Bains, M.J.Lemieux, G.R.Gordon, R.E.Campbell. A Genetically Encoded Fluorescent Biosensor For Extracellular L-Lactate. Nat Commun V. 12 7058 2021.
ISSN: ESSN 2041-1723
PubMed: 34873165
DOI: 10.1038/S41467-021-27332-2
Page generated: Fri Jul 19 00:20:03 2024

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