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Calcium in PDB 7f36: Tact Complexed with Acetyl-Glycyl-Trnagly

Protein crystallography data

The structure of Tact Complexed with Acetyl-Glycyl-Trnagly, PDB code: 7f36 was solved by Y.Yashiro, K.Tomita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.04 / 3.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.743, 121.873, 127.257, 90, 91.07, 90
R / Rfree (%) 20.9 / 26.3

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 41;

Binding sites:

The binding sites of Calcium atom in the Tact Complexed with Acetyl-Glycyl-Trnagly (pdb code 7f36). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 41 binding sites of Calcium where determined in the Tact Complexed with Acetyl-Glycyl-Trnagly, PDB code: 7f36:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 41 in 7f36

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Calcium binding site 1 out of 41 in the Tact Complexed with Acetyl-Glycyl-Trnagly


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Tact Complexed with Acetyl-Glycyl-Trnagly within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:78.9
occ:1.00
OG A:SER97 2.6 63.8 1.0
OD2 A:ASP95 3.0 70.0 1.0
OD1 A:ASP95 3.0 66.0 1.0
CG A:ASP95 3.4 65.6 1.0
CG2 A:VAL20 3.6 69.2 1.0
CB A:SER97 3.8 64.0 1.0
O A:GLU18 4.3 77.0 1.0
N A:SER97 4.6 62.0 1.0
CA A:SER97 4.9 56.8 1.0
CB A:ASP95 4.9 62.7 1.0

Calcium binding site 2 out of 41 in 7f36

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Calcium binding site 2 out of 41 in the Tact Complexed with Acetyl-Glycyl-Trnagly


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Tact Complexed with Acetyl-Glycyl-Trnagly within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca201

b:94.1
occ:1.00
OG B:SER97 2.8 85.1 1.0
OD2 B:ASP95 3.4 69.9 1.0
OD1 B:ASP95 3.9 62.1 1.0
CG B:ASP95 4.0 62.6 1.0
CB B:SER97 4.1 73.6 1.0
O B:GLU18 4.4 60.9 1.0
OE1 B:GLN55 4.7 96.2 1.0
CG2 B:VAL20 4.7 70.5 1.0

Calcium binding site 3 out of 41 in 7f36

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Calcium binding site 3 out of 41 in the Tact Complexed with Acetyl-Glycyl-Trnagly


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Tact Complexed with Acetyl-Glycyl-Trnagly within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca101

b:78.4
occ:1.00
O6 F:G4 2.6 46.1 1.0
O6 F:G3 3.2 42.3 1.0
C6 F:G4 3.5 45.9 1.0
N7 F:G4 3.7 48.4 1.0
N7 F:G3 3.9 48.1 1.0
C6 F:G3 3.9 43.5 1.0
C5 F:G4 3.9 46.4 1.0
C5 F:G3 4.1 44.1 1.0
N4 F:C69 4.3 50.8 1.0
O6 F:G5 4.8 48.7 1.0
N1 F:G4 4.8 43.4 1.0
C8 F:G4 4.9 47.9 1.0
C8 F:G3 5.0 51.3 1.0
N4 F:C2 5.0 40.3 1.0

Calcium binding site 4 out of 41 in 7f36

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Calcium binding site 4 out of 41 in the Tact Complexed with Acetyl-Glycyl-Trnagly


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Tact Complexed with Acetyl-Glycyl-Trnagly within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca102

b:84.9
occ:1.00
OP2 F:A14 2.2 96.0 1.0
OP1 F:A7 2.6 79.3 1.0
P F:A14 3.6 89.1 1.0
P F:A7 3.8 59.3 1.0
O3' F:A6 3.8 58.9 1.0
O4 F:U8 3.9 77.1 1.0
OP1 F:A14 4.2 93.6 1.0
O5' F:A14 4.3 81.5 1.0
O3' F:C13 4.6 80.8 1.0
C4 F:U8 4.6 74.8 1.0
O5' F:A7 4.7 51.1 1.0
C3' F:C13 4.9 88.3 1.0
C5' F:A7 4.9 48.7 1.0
OP2 F:A7 4.9 59.9 1.0
C5 F:U8 5.0 68.2 1.0

Calcium binding site 5 out of 41 in 7f36

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Calcium binding site 5 out of 41 in the Tact Complexed with Acetyl-Glycyl-Trnagly


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Tact Complexed with Acetyl-Glycyl-Trnagly within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca103

b:74.0
occ:1.00
O4 F:U65 3.0 71.6 1.0
C4 F:U65 4.0 68.4 1.0
C5 F:U65 4.3 64.7 1.0
N7 F:G64 4.6 67.7 1.0
O4 F:U66 5.0 56.6 1.0

Calcium binding site 6 out of 41 in 7f36

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Calcium binding site 6 out of 41 in the Tact Complexed with Acetyl-Glycyl-Trnagly


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Tact Complexed with Acetyl-Glycyl-Trnagly within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca104

b:82.5
occ:1.00
OP2 F:U55 4.1 82.4 1.0
OP2 F:C56 4.3 70.9 1.0
OP2 F:G57 4.3 62.6 1.0
OP1 F:G57 4.7 68.8 1.0
C5 F:U55 4.8 60.5 1.0
P F:G57 4.9 64.4 1.0

Calcium binding site 7 out of 41 in 7f36

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Calcium binding site 7 out of 41 in the Tact Complexed with Acetyl-Glycyl-Trnagly


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Tact Complexed with Acetyl-Glycyl-Trnagly within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca105

b:62.6
occ:1.00
OP1 F:G59 2.3 67.0 1.0
O4 F:U60 2.5 67.6 1.0
OP1 F:U20 2.6 96.0 1.0
C4 F:U60 3.6 70.0 1.0
OP2 F:A21 3.7 102.9 1.0
P F:G59 3.8 51.4 1.0
P F:U20 4.0 100.3 1.0
C5 F:U60 4.1 64.2 1.0
N7 F:G59 4.3 71.8 1.0
O5' F:U20 4.3 96.8 1.0
C8 F:G59 4.5 65.2 1.0
O5' F:G59 4.6 53.9 1.0
O3' F:A58 4.6 51.2 1.0
C4' F:A58 4.6 59.1 1.0
OP2 F:G59 4.7 63.9 1.0
N3 F:U60 4.7 71.8 1.0
C4' F:G19 4.7 80.2 1.0
C5' F:G19 4.9 76.2 1.0
OP2 F:U20 4.9 94.9 1.0

Calcium binding site 8 out of 41 in 7f36

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Calcium binding site 8 out of 41 in the Tact Complexed with Acetyl-Glycyl-Trnagly


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Tact Complexed with Acetyl-Glycyl-Trnagly within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca106

b:71.3
occ:1.00
OP1 F:C48 2.5 67.3 1.0
P F:C48 3.8 59.6 1.0
OP2 F:C50 3.8 66.2 1.0
O5' F:C48 4.3 62.4 1.0
OP1 F:G49 4.3 53.6 1.0
OP2 F:C48 4.3 54.1 1.0
C3' F:C48 4.7 59.5 1.0
C5' F:C48 4.7 56.2 1.0

Calcium binding site 9 out of 41 in 7f36

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Calcium binding site 9 out of 41 in the Tact Complexed with Acetyl-Glycyl-Trnagly


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Tact Complexed with Acetyl-Glycyl-Trnagly within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca107

b:72.5
occ:1.00
OP2 F:U47 2.4 65.1 1.0
OP1 F:G46 2.9 69.8 1.0
P F:U47 3.9 69.8 1.0
P F:G46 4.0 75.1 1.0
O5' F:G46 4.3 67.2 1.0
C3' F:G46 4.5 66.1 1.0
OP2 F:G46 4.5 69.2 1.0
O5' F:U47 4.7 66.5 1.0
OP1 F:U47 4.8 64.0 1.0
O3' F:G46 4.8 65.7 1.0

Calcium binding site 10 out of 41 in 7f36

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Calcium binding site 10 out of 41 in the Tact Complexed with Acetyl-Glycyl-Trnagly


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Tact Complexed with Acetyl-Glycyl-Trnagly within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca108

b:102.2
occ:1.00
OP1 F:G19 2.4 78.0 1.0
O4 F:U17 3.0 94.0 1.0
O6 F:G59 3.1 79.4 1.0
C4 F:U17 3.5 107.3 1.0
P F:G19 3.8 81.2 1.0
N3 F:U60 3.8 71.8 1.0
N3 F:U17 3.9 110.5 1.0
OP2 F:U20 4.1 94.9 1.0
O5' F:G19 4.1 74.7 1.0
C5' F:G19 4.2 76.2 1.0
O4 F:U60 4.2 67.6 1.0
C6 F:G59 4.2 73.9 1.0
C5 F:U17 4.4 111.0 1.0
O2 F:U60 4.4 75.8 1.0
C4 F:U60 4.5 70.0 1.0
OP1 F:U20 4.6 96.0 1.0
C2 F:U60 4.6 70.7 1.0
C3' F:G19 4.7 86.8 1.0
OP2 F:G19 4.7 89.4 1.0
OP2 F:U16 4.8 85.0 1.0
P F:U20 4.8 100.3 1.0
O3' F:G18 4.8 78.5 1.0
N7 F:G59 4.9 71.8 1.0
C4' F:G19 4.9 80.2 1.0
C5 F:G59 5.0 69.7 1.0

Reference:

Y.Yashiro, K.Tomita. Tact Complexed with Acetyl-Glycyl-Trnagly To Be Published.
Page generated: Fri Dec 24 05:19:37 2021

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