Atomistry » Calcium » PDB 7et9-7f9g » 7f4h
Atomistry »
  Calcium »
    PDB 7et9-7f9g »
      7f4h »

Calcium in PDB 7f4h: Cryo-Em Structure of Afamelanotide-Bound Melanocortin-1 Receptor in Complex with Gs Protein, NB35 and SCFV16

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of Afamelanotide-Bound Melanocortin-1 Receptor in Complex with Gs Protein, NB35 and SCFV16 (pdb code 7f4h). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cryo-Em Structure of Afamelanotide-Bound Melanocortin-1 Receptor in Complex with Gs Protein, NB35 and SCFV16, PDB code: 7f4h:

Calcium binding site 1 out of 1 in 7f4h

Go back to Calcium Binding Sites List in 7f4h
Calcium binding site 1 out of 1 in the Cryo-Em Structure of Afamelanotide-Bound Melanocortin-1 Receptor in Complex with Gs Protein, NB35 and SCFV16


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Afamelanotide-Bound Melanocortin-1 Receptor in Complex with Gs Protein, NB35 and SCFV16 within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Ca501

b:140.7
occ:1.00
O F:DPN7 2.3 20.0 1.0
OD1 R:ASP121 2.3 138.8 1.0
OD2 R:ASP121 2.3 138.8 1.0
OE2 R:GLU94 2.5 147.0 1.0
O F:GLU5 2.5 30.0 1.0
CG R:ASP121 2.6 138.8 1.0
OD1 R:ASP117 2.6 147.6 1.0
C F:DPN7 3.4 20.0 1.0
CG R:ASP117 3.5 147.6 1.0
C F:GLU5 3.7 30.0 1.0
CD R:GLU94 3.7 147.0 1.0
OD2 R:ASP117 3.7 147.6 1.0
N F:DPN7 3.8 20.0 1.0
NH1 F:ARG8 3.8 30.0 1.0
CA F:DPN7 4.0 20.0 1.0
CB R:ASP121 4.1 138.8 1.0
CG F:ARG8 4.1 30.0 1.0
C F:HIS6 4.3 30.0 1.0
O R:ASP117 4.3 147.6 1.0
CB F:DPN7 4.4 20.0 1.0
N F:ARG8 4.4 30.0 1.0
OE1 R:GLU94 4.4 147.0 1.0
N F:GLU5 4.5 30.0 1.0
N F:HIS6 4.6 30.0 1.0
CA F:GLU5 4.7 30.0 1.0
CA F:HIS6 4.7 30.0 1.0
CD1 F:DPN7 4.8 20.0 1.0
CG R:GLU94 4.8 147.0 1.0
CA F:ARG8 4.8 30.0 1.0
CZ F:ARG8 4.9 30.0 1.0
CA R:ASP121 4.9 138.8 1.0
CB R:ASP117 4.9 147.6 1.0
O F:HIS6 5.0 30.0 1.0

Reference:

S.Ma, Y.Chen, A.Dai, W.Yin, J.Guo, D.Yang, F.Zhou, Y.Jiang, M.W.Wang, H.E.Xu. Structural Mechanism of Calcium-Mediated Hormone Recognition and G Beta Interaction By the Human Melanocortin-1 Receptor. Cell Res. 2021.
ISSN: ISSN 1001-0602
PubMed: 34453129
DOI: 10.1038/S41422-021-00557-Y
Page generated: Wed Jul 9 21:59:01 2025

Last articles

Cd in 1G0C
Cd in 1G01
Cd in 1G8F
Cd in 1G3W
Cd in 1FY6
Cd in 1FYE
Cd in 1FY2
Cd in 1FXP
Cd in 1FWW
Cd in 1FWT
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy