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Calcium in PDB 7f53: Cryo-Em Structure of A-Msh-MC4R-GS_NB35 Complex

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of A-Msh-MC4R-GS_NB35 Complex (pdb code 7f53). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cryo-Em Structure of A-Msh-MC4R-GS_NB35 Complex, PDB code: 7f53:

Calcium binding site 1 out of 1 in 7f53

Go back to Calcium Binding Sites List in 7f53
Calcium binding site 1 out of 1 in the Cryo-Em Structure of A-Msh-MC4R-GS_NB35 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of A-Msh-MC4R-GS_NB35 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Ca601

b:117.3
occ:1.00
OD1 R:ASP122 2.3 122.3 1.0
O L:GLU5 2.4 117.8 0.5
OE2 R:GLU100 2.4 119.6 1.0
OD1 R:ASP126 2.5 108.0 1.0
OD2 R:ASP126 2.5 108.0 1.0
O L:GLU5 2.5 117.8 0.6
O L:PHE7 2.7 107.9 1.0
CG R:ASP126 2.8 108.0 1.0
CG R:ASP122 3.4 122.3 1.0
CD R:GLU100 3.5 119.6 1.0
C L:GLU5 3.6 117.8 0.5
C L:PHE7 3.6 107.9 1.0
C L:GLU5 3.6 117.8 0.6
N L:PHE7 3.7 107.9 1.0
CA L:PHE7 3.7 107.9 1.0
OE1 R:GLU100 3.9 119.6 1.0
OD2 R:ASP122 3.9 122.3 1.0
C L:HIS6 4.0 113.1 0.8
C L:HIS6 4.0 113.1 0.2
N L:GLU5 4.3 117.8 0.6
N L:GLU5 4.3 117.8 0.5
CB R:ASP126 4.3 108.0 1.0
N L:HIS6 4.3 113.1 0.8
O R:ASP122 4.4 122.3 1.0
NH1 L:ARG8 4.4 107.8 1.0
O L:HIS6 4.4 113.1 0.8
N L:HIS6 4.5 113.1 0.2
O L:HIS6 4.5 113.1 0.2
CA L:GLU5 4.5 117.8 0.5
CA L:GLU5 4.5 117.8 0.6
CA L:HIS6 4.5 113.1 0.8
CA L:HIS6 4.6 113.1 0.2
CE L:MET4 4.7 127.6 1.0
CB R:ASP122 4.7 122.3 1.0
CG R:GLU100 4.7 119.6 1.0
N L:ARG8 4.8 107.8 1.0
CA R:ASP122 4.9 122.3 1.0
C R:ASP122 5.0 122.3 1.0

Reference:

H.Zhang, L.N.Chen, D.Yang, C.Mao, Q.Shen, W.Feng, D.D.Shen, A.Dai, S.Xie, Y.Zhou, J.Qin, J.P.Sun, D.H.Scharf, T.Hou, T.Zhou, M.W.Wang, Y.Zhang. Structural Insights Into Ligand Recognition and Activation of the Melanocortin-4 Receptor. Cell Res. 2021.
ISSN: ISSN 1001-0602
PubMed: 34433901
DOI: 10.1038/S41422-021-00552-3
Page generated: Wed Jul 9 21:59:19 2025

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