Calcium in PDB 7f54: Cryo-Em Structure of Afamelanotide-MC4R-GS_NB35 Complex

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of Afamelanotide-MC4R-GS_NB35 Complex (pdb code 7f54). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cryo-Em Structure of Afamelanotide-MC4R-GS_NB35 Complex, PDB code: 7f54:

Calcium binding site 1 out of 1 in 7f54

Go back to Calcium Binding Sites List in 7f54
Calcium binding site 1 out of 1 in the Cryo-Em Structure of Afamelanotide-MC4R-GS_NB35 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Afamelanotide-MC4R-GS_NB35 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Ca601

b:82.1
occ:1.00
O L:DPN7 2.4 71.0 1.0
OD1 R:ASP122 2.5 84.8 1.0
OD2 R:ASP126 2.5 71.6 1.0
OD1 R:ASP126 2.7 71.6 1.0
O L:GLU5 2.7 83.9 1.0
OE2 R:GLU100 2.8 82.2 1.0
CG R:ASP126 2.9 71.6 1.0
CG R:ASP122 3.6 84.8 1.0
C L:DPN7 3.6 71.0 1.0
CD R:GLU100 3.9 82.2 1.0
C L:GLU5 4.0 83.9 1.0
N L:DPN7 4.1 71.0 1.0
OD2 R:ASP122 4.2 84.8 1.0
OE1 R:GLU100 4.3 82.2 1.0
CA L:DPN7 4.3 71.0 1.0
N L:GLU5 4.4 83.9 1.0
CB R:ASP126 4.4 71.6 1.0
C L:HIS6 4.4 78.7 1.0
CD L:ARG8 4.5 71.7 1.0
O R:ASP122 4.6 84.8 1.0
N L:ARG8 4.6 71.7 1.0
CB L:DPN7 4.7 71.0 1.0
CB R:ASP122 4.8 84.8 1.0
CA L:GLU5 4.8 83.9 1.0
O L:HIS6 4.8 78.7 1.0
CA L:ARG8 4.8 71.7 1.0
CG L:NLE4 4.9 88.7 1.0
N L:HIS6 4.9 78.7 1.0
CA L:HIS6 5.0 78.7 1.0

Reference:

H.Zhang, L.N.Chen, D.Yang, C.Mao, Q.Shen, W.Feng, D.D.Shen, A.Dai, S.Xie, Y.Zhou, J.Qin, J.P.Sun, D.H.Scharf, T.Hou, T.Zhou, M.W.Wang, Y.Zhang. Structural Insights Into Ligand Recognition and Activation of the Melanocortin-4 Receptor. Cell Res. 2021.
ISSN: ISSN 1001-0602
PubMed: 34433901
DOI: 10.1038/S41422-021-00552-3
Page generated: Fri Nov 5 11:35:35 2021

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