Calcium in PDB 7fhl: Structure of ATTPC1 with 50 Mm CA2+
Calcium Binding Sites:
The binding sites of Calcium atom in the Structure of ATTPC1 with 50 Mm CA2+
(pdb code 7fhl). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the
Structure of ATTPC1 with 50 Mm CA2+, PDB code: 7fhl:
Jump to Calcium binding site number:
1;
2;
3;
4;
Calcium binding site 1 out
of 4 in 7fhl
Go back to
Calcium Binding Sites List in 7fhl
Calcium binding site 1 out
of 4 in the Structure of ATTPC1 with 50 Mm CA2+
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of ATTPC1 with 50 Mm CA2+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1001
b:210.0
occ:1.00
|
OD1
|
A:ASN339
|
2.8
|
205.1
|
1.0
|
CB
|
A:GLU341
|
2.9
|
209.4
|
1.0
|
O
|
A:GLU341
|
3.2
|
209.4
|
1.0
|
OD2
|
A:ASP335
|
3.2
|
201.9
|
1.0
|
OD1
|
A:ASP335
|
3.3
|
201.9
|
1.0
|
CG
|
A:ASP335
|
3.5
|
201.9
|
1.0
|
CG
|
A:ASN339
|
3.6
|
205.1
|
1.0
|
CG
|
A:GLU341
|
3.7
|
209.4
|
1.0
|
ND2
|
A:ASN339
|
3.7
|
205.1
|
1.0
|
C
|
A:GLU341
|
3.8
|
209.4
|
1.0
|
CA
|
A:GLU341
|
3.8
|
209.4
|
1.0
|
N
|
A:GLU341
|
4.1
|
209.4
|
1.0
|
OE1
|
A:GLN346
|
4.9
|
207.6
|
1.0
|
CB
|
A:ASP335
|
4.9
|
201.9
|
1.0
|
N
|
A:ILE342
|
4.9
|
210.9
|
1.0
|
CB
|
A:ASP337
|
5.0
|
203.1
|
1.0
|
|
Calcium binding site 2 out
of 4 in 7fhl
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Calcium Binding Sites List in 7fhl
Calcium binding site 2 out
of 4 in the Structure of ATTPC1 with 50 Mm CA2+
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of ATTPC1 with 50 Mm CA2+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1002
b:134.6
occ:1.00
|
OD2
|
C:ASP240
|
2.6
|
108.5
|
1.0
|
OE1
|
A:GLU528
|
2.6
|
134.5
|
1.0
|
OD1
|
A:ASP454
|
2.8
|
123.1
|
1.0
|
OD2
|
A:ASP454
|
3.2
|
123.1
|
1.0
|
CG
|
A:ASP454
|
3.4
|
123.1
|
1.0
|
CG
|
C:ASP240
|
3.5
|
108.5
|
1.0
|
CD
|
A:GLU528
|
3.7
|
134.5
|
1.0
|
OD1
|
C:ASP240
|
3.9
|
108.5
|
1.0
|
OE2
|
A:GLU528
|
4.4
|
134.5
|
1.0
|
OE1
|
A:GLN461
|
4.5
|
136.9
|
1.0
|
CG
|
A:GLU528
|
4.6
|
134.5
|
1.0
|
OD1
|
A:ASN526
|
4.6
|
146.2
|
1.0
|
NE2
|
A:GLN461
|
4.6
|
136.9
|
1.0
|
OE1
|
A:GLU457
|
4.7
|
126.3
|
1.0
|
CB
|
C:ASP240
|
4.7
|
108.5
|
1.0
|
ND2
|
A:ASN526
|
4.8
|
146.2
|
1.0
|
CB
|
A:ASP454
|
4.8
|
123.1
|
1.0
|
|
Calcium binding site 3 out
of 4 in 7fhl
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Calcium Binding Sites List in 7fhl
Calcium binding site 3 out
of 4 in the Structure of ATTPC1 with 50 Mm CA2+
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of ATTPC1 with 50 Mm CA2+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1001
b:209.9
occ:1.00
|
OD1
|
C:ASN339
|
2.8
|
206.4
|
1.0
|
CB
|
C:GLU341
|
2.9
|
210.5
|
1.0
|
O
|
C:GLU341
|
3.2
|
210.5
|
1.0
|
OD2
|
C:ASP335
|
3.2
|
202.5
|
1.0
|
OD1
|
C:ASP335
|
3.4
|
202.5
|
1.0
|
CG
|
C:ASN339
|
3.6
|
206.4
|
1.0
|
CG
|
C:ASP335
|
3.6
|
202.5
|
1.0
|
CG
|
C:GLU341
|
3.7
|
210.5
|
1.0
|
ND2
|
C:ASN339
|
3.7
|
206.4
|
1.0
|
C
|
C:GLU341
|
3.8
|
210.5
|
1.0
|
CA
|
C:GLU341
|
3.8
|
210.5
|
1.0
|
N
|
C:GLU341
|
4.1
|
210.5
|
1.0
|
N
|
C:ILE342
|
4.9
|
211.6
|
1.0
|
CB
|
C:ASP335
|
4.9
|
202.5
|
1.0
|
|
Calcium binding site 4 out
of 4 in 7fhl
Go back to
Calcium Binding Sites List in 7fhl
Calcium binding site 4 out
of 4 in the Structure of ATTPC1 with 50 Mm CA2+
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of ATTPC1 with 50 Mm CA2+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1002
b:139.2
occ:1.00
|
OD2
|
A:ASP240
|
2.6
|
108.1
|
1.0
|
OE1
|
C:GLU528
|
2.6
|
135.3
|
1.0
|
OD1
|
C:ASP454
|
2.8
|
124.1
|
1.0
|
OD2
|
C:ASP454
|
3.4
|
124.1
|
1.0
|
CG
|
C:ASP454
|
3.5
|
124.1
|
1.0
|
CG
|
A:ASP240
|
3.5
|
108.1
|
1.0
|
CD
|
C:GLU528
|
3.7
|
135.3
|
1.0
|
OD1
|
A:ASP240
|
3.9
|
108.1
|
1.0
|
OE1
|
C:GLN461
|
4.3
|
137.8
|
1.0
|
OE2
|
C:GLU528
|
4.4
|
135.3
|
1.0
|
CG
|
C:GLU528
|
4.6
|
135.3
|
1.0
|
NE2
|
C:GLN461
|
4.6
|
137.8
|
1.0
|
OD1
|
C:ASN526
|
4.7
|
144.4
|
1.0
|
ND2
|
C:ASN526
|
4.7
|
144.4
|
1.0
|
CB
|
A:ASP240
|
4.7
|
108.1
|
1.0
|
OE1
|
C:GLU457
|
4.9
|
126.8
|
1.0
|
CB
|
C:ASP454
|
4.9
|
124.1
|
1.0
|
CD
|
C:GLN461
|
4.9
|
137.8
|
1.0
|
|
Reference:
F.Ye,
L.Xu,
X.Li,
W.Zeng,
N.Gan,
C.Zhao,
W.Yang,
Y.Jiang,
J.Guo.
Voltage Gating and Cytosolic CA2+ Activation Mechanisms of Arabidopsis Two-Pore Channel ATTPC1 Proc.Natl.Acad.Sci.Usa 2021.
ISSN: ESSN 1091-6490
Page generated: Fri Jul 19 00:55:58 2024
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