Atomistry » Calcium » PDB 7g3v-7g4y » 7g4l
Atomistry »
  Calcium »
    PDB 7g3v-7g4y »
      7g4l »

Calcium in PDB 7g4l: Crystal Structure of Rat Autotaxin in Complex with N-[2-Amino-4-[3-[4- (Trifluoromethyl)Phenyl]Propanoyl]Phenyl]Acetamide, I.E. Smiles C1C(Ccc(C1N)Nc(=O)C)C(=O)CCC1CCC(CC1)C(F)(F)F with IC50=0.529423 Microm

Enzymatic activity of Crystal Structure of Rat Autotaxin in Complex with N-[2-Amino-4-[3-[4- (Trifluoromethyl)Phenyl]Propanoyl]Phenyl]Acetamide, I.E. Smiles C1C(Ccc(C1N)Nc(=O)C)C(=O)CCC1CCC(CC1)C(F)(F)F with IC50=0.529423 Microm

All present enzymatic activity of Crystal Structure of Rat Autotaxin in Complex with N-[2-Amino-4-[3-[4- (Trifluoromethyl)Phenyl]Propanoyl]Phenyl]Acetamide, I.E. Smiles C1C(Ccc(C1N)Nc(=O)C)C(=O)CCC1CCC(CC1)C(F)(F)F with IC50=0.529423 Microm:
3.1.4.39;

Protein crystallography data

The structure of Crystal Structure of Rat Autotaxin in Complex with N-[2-Amino-4-[3-[4- (Trifluoromethyl)Phenyl]Propanoyl]Phenyl]Acetamide, I.E. Smiles C1C(Ccc(C1N)Nc(=O)C)C(=O)CCC1CCC(CC1)C(F)(F)F with IC50=0.529423 Microm, PDB code: 7g4l was solved by M.Stihle, J.Benz, D.Hunziker, E.Pinard, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.85 / 1.71
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.818, 91.749, 119.246, 90, 90, 90
R / Rfree (%) 18.7 / 22.5

Other elements in 7g4l:

The structure of Crystal Structure of Rat Autotaxin in Complex with N-[2-Amino-4-[3-[4- (Trifluoromethyl)Phenyl]Propanoyl]Phenyl]Acetamide, I.E. Smiles C1C(Ccc(C1N)Nc(=O)C)C(=O)CCC1CCC(CC1)C(F)(F)F with IC50=0.529423 Microm also contains other interesting chemical elements:

Sodium (Na) 1 atom
Zinc (Zn) 1 atom
Chlorine (Cl) 1 atom
Fluorine (F) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Rat Autotaxin in Complex with N-[2-Amino-4-[3-[4- (Trifluoromethyl)Phenyl]Propanoyl]Phenyl]Acetamide, I.E. Smiles C1C(Ccc(C1N)Nc(=O)C)C(=O)CCC1CCC(CC1)C(F)(F)F with IC50=0.529423 Microm (pdb code 7g4l). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Rat Autotaxin in Complex with N-[2-Amino-4-[3-[4- (Trifluoromethyl)Phenyl]Propanoyl]Phenyl]Acetamide, I.E. Smiles C1C(Ccc(C1N)Nc(=O)C)C(=O)CCC1CCC(CC1)C(F)(F)F with IC50=0.529423 Microm, PDB code: 7g4l:

Calcium binding site 1 out of 1 in 7g4l

Go back to Calcium Binding Sites List in 7g4l
Calcium binding site 1 out of 1 in the Crystal Structure of Rat Autotaxin in Complex with N-[2-Amino-4-[3-[4- (Trifluoromethyl)Phenyl]Propanoyl]Phenyl]Acetamide, I.E. Smiles C1C(Ccc(C1N)Nc(=O)C)C(=O)CCC1CCC(CC1)C(F)(F)F with IC50=0.529423 Microm


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Rat Autotaxin in Complex with N-[2-Amino-4-[3-[4- (Trifluoromethyl)Phenyl]Propanoyl]Phenyl]Acetamide, I.E. Smiles C1C(Ccc(C1N)Nc(=O)C)C(=O)CCC1CCC(CC1)C(F)(F)F with IC50=0.529423 Microm within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca904

b:16.1
occ:1.00
 OD1 A:ASP747 2.3 16.1 1.0
O A:HOH1411 2.3 18.7 1.0
O A:LEU745 2.3 16.1 1.0
OD1 A:ASN741 2.3 18.6 1.0
OD1 A:ASP743 2.4 18.0 1.0
OD1 A:ASP739 2.4 16.6 1.0
CG A:ASP743 3.3 18.5 1.0
CG A:ASN741 3.4 19.1 1.0
C A:LEU745 3.5 14.9 1.0
CG A:ASP739 3.5 16.4 1.0
CG A:ASP747 3.5 16.0 1.0
OD2 A:ASP743 3.7 19.5 1.0
ND2 A:ASN741 3.9 20.0 1.0
N A:ASP747 3.9 14.2 1.0
CA A:ASP739 4.0 14.1 1.0
C A:ARG746 4.0 14.8 1.0
N A:LEU745 4.1 13.7 1.0
CA A:ASP747 4.1 16.2 1.0
CA A:LEU745 4.2 14.4 1.0
O A:ARG746 4.2 14.2 1.0
CB A:ASP739 4.2 15.5 1.0
N A:ASP743 4.3 16.2 1.0
OD2 A:ASP747 4.4 17.0 1.0
CB A:ASP747 4.4 15.5 1.0
CB A:LEU745 4.4 15.3 1.0
O A:PHE738 4.4 12.8 1.0
OD2 A:ASP739 4.4 15.9 1.0
OE2 A:GLU751 4.5 25.1 1.0
N A:ASN741 4.5 15.6 1.0
N A:ARG746 4.5 14.5 1.0
C A:ASP739 4.5 14.2 1.0
CB A:ASP743 4.5 17.4 1.0
N A:TYR740 4.7 14.3 1.0
O A:HOH1351 4.7 27.9 1.0
CA A:ARG746 4.7 14.8 1.0
CB A:ASN741 4.7 17.8 1.0
CA A:ASP743 4.8 15.9 1.0
N A:TYR742 4.8 16.5 1.0
C A:ASN741 4.9 16.7 1.0
CA A:ASN741 4.9 17.3 1.0
N A:GLY744 4.9 16.1 1.0

Reference:

D.Hunziker, S.C.Joachim, C.Ullmer, M.G.Rudolph. Crystal Structure of A Rat Autotaxin Complex To Be Published.
Page generated: Sat Feb 8 15:46:26 2025

Last articles

Mn in 8XK0
Mn in 8XHV
Mn in 8XJW
Mn in 8XJX
Mn in 8VUK
Mn in 8RE9
Mn in 8RE6
Mn in 8RE7
Mn in 8RE8
Mn in 8RE5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy