Atomistry » Calcium » PDB 7g77-7jl8 » 7g77
Atomistry »
  Calcium »
    PDB 7g77-7jl8 »
      7g77 »

Calcium in PDB 7g77: Crystal Structure of Rat Autotaxin in Complex with 2-[6-(1- Acetylpiperidin-4-Yl)-4-Oxoquinazolin-3-Yl]-N-[(3-Chloro-4- Cyanophenyl)Methyl]-N-Methylacetamide, I.E. Smiles C1(CCC2C(C1)C(=O) N(C=N2)Cc(=O)N(CC1CC(C(CC1)C#N)Cl)C)C1CCN(CC1)C(=O)C with IC50=0.0234152 Microm

Enzymatic activity of Crystal Structure of Rat Autotaxin in Complex with 2-[6-(1- Acetylpiperidin-4-Yl)-4-Oxoquinazolin-3-Yl]-N-[(3-Chloro-4- Cyanophenyl)Methyl]-N-Methylacetamide, I.E. Smiles C1(CCC2C(C1)C(=O) N(C=N2)Cc(=O)N(CC1CC(C(CC1)C#N)Cl)C)C1CCN(CC1)C(=O)C with IC50=0.0234152 Microm

All present enzymatic activity of Crystal Structure of Rat Autotaxin in Complex with 2-[6-(1- Acetylpiperidin-4-Yl)-4-Oxoquinazolin-3-Yl]-N-[(3-Chloro-4- Cyanophenyl)Methyl]-N-Methylacetamide, I.E. Smiles C1(CCC2C(C1)C(=O) N(C=N2)Cc(=O)N(CC1CC(C(CC1)C#N)Cl)C)C1CCN(CC1)C(=O)C with IC50=0.0234152 Microm:
3.1.4.39;

Protein crystallography data

The structure of Crystal Structure of Rat Autotaxin in Complex with 2-[6-(1- Acetylpiperidin-4-Yl)-4-Oxoquinazolin-3-Yl]-N-[(3-Chloro-4- Cyanophenyl)Methyl]-N-Methylacetamide, I.E. Smiles C1(CCC2C(C1)C(=O) N(C=N2)Cc(=O)N(CC1CC(C(CC1)C#N)Cl)C)C1CCN(CC1)C(=O)C with IC50=0.0234152 Microm, PDB code: 7g77 was solved by M.Stihle, J.Benz, D.Hunziker, E.Martin-Rainer, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.14 / 1.79
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 84.279, 92.065, 120.974, 90, 90, 90
R / Rfree (%) 18.8 / 23.5

Other elements in 7g77:

The structure of Crystal Structure of Rat Autotaxin in Complex with 2-[6-(1- Acetylpiperidin-4-Yl)-4-Oxoquinazolin-3-Yl]-N-[(3-Chloro-4- Cyanophenyl)Methyl]-N-Methylacetamide, I.E. Smiles C1(CCC2C(C1)C(=O) N(C=N2)Cc(=O)N(CC1CC(C(CC1)C#N)Cl)C)C1CCN(CC1)C(=O)C with IC50=0.0234152 Microm also contains other interesting chemical elements:

Sodium (Na) 1 atom
Zinc (Zn) 1 atom
Chlorine (Cl) 2 atoms
Potassium (K) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Rat Autotaxin in Complex with 2-[6-(1- Acetylpiperidin-4-Yl)-4-Oxoquinazolin-3-Yl]-N-[(3-Chloro-4- Cyanophenyl)Methyl]-N-Methylacetamide, I.E. Smiles C1(CCC2C(C1)C(=O) N(C=N2)Cc(=O)N(CC1CC(C(CC1)C#N)Cl)C)C1CCN(CC1)C(=O)C with IC50=0.0234152 Microm (pdb code 7g77). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Rat Autotaxin in Complex with 2-[6-(1- Acetylpiperidin-4-Yl)-4-Oxoquinazolin-3-Yl]-N-[(3-Chloro-4- Cyanophenyl)Methyl]-N-Methylacetamide, I.E. Smiles C1(CCC2C(C1)C(=O) N(C=N2)Cc(=O)N(CC1CC(C(CC1)C#N)Cl)C)C1CCN(CC1)C(=O)C with IC50=0.0234152 Microm, PDB code: 7g77:

Calcium binding site 1 out of 1 in 7g77

Go back to Calcium Binding Sites List in 7g77
Calcium binding site 1 out of 1 in the Crystal Structure of Rat Autotaxin in Complex with 2-[6-(1- Acetylpiperidin-4-Yl)-4-Oxoquinazolin-3-Yl]-N-[(3-Chloro-4- Cyanophenyl)Methyl]-N-Methylacetamide, I.E. Smiles C1(CCC2C(C1)C(=O) N(C=N2)Cc(=O)N(CC1CC(C(CC1)C#N)Cl)C)C1CCN(CC1)C(=O)C with IC50=0.0234152 Microm


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Rat Autotaxin in Complex with 2-[6-(1- Acetylpiperidin-4-Yl)-4-Oxoquinazolin-3-Yl]-N-[(3-Chloro-4- Cyanophenyl)Methyl]-N-Methylacetamide, I.E. Smiles C1(CCC2C(C1)C(=O) N(C=N2)Cc(=O)N(CC1CC(C(CC1)C#N)Cl)C)C1CCN(CC1)C(=O)C with IC50=0.0234152 Microm within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca907

b:19.1
occ:1.00
 OD1 A:ASP747 2.2 21.2 1.0
OD1 A:ASP739 2.3 19.1 1.0
OD1 A:ASP743 2.3 20.6 1.0
O A:LEU745 2.3 17.8 1.0
OD1 A:ASN741 2.3 21.4 1.0
O A:HOH1505 2.4 24.3 1.0
CG A:ASP743 3.3 21.7 1.0
CG A:ASN741 3.4 24.3 1.0
CG A:ASP739 3.4 18.5 1.0
C A:LEU745 3.5 18.8 1.0
CG A:ASP747 3.5 21.4 1.0
OD2 A:ASP743 3.7 23.7 1.0
ND2 A:ASN741 3.8 24.6 1.0
CA A:ASP739 3.9 17.0 1.0
N A:ASP747 3.9 19.6 1.0
N A:LEU745 4.1 17.3 1.0
C A:ARG746 4.1 17.8 1.0
CA A:ASP747 4.1 19.9 1.0
CB A:ASP739 4.2 18.0 1.0
CA A:LEU745 4.2 17.9 1.0
O A:ARG746 4.2 19.4 1.0
N A:ASP743 4.3 19.1 1.0
OD2 A:ASP739 4.3 17.5 1.0
OD2 A:ASP747 4.4 20.9 1.0
O A:PHE738 4.4 17.5 1.0
CB A:LEU745 4.4 18.6 1.0
CB A:ASP747 4.4 19.5 1.0
C A:ASP739 4.4 18.7 1.0
O A:HOH1296 4.5 35.6 1.0
N A:ASN741 4.5 20.6 1.0
N A:ARG746 4.5 16.7 1.0
CB A:ASP743 4.5 20.1 1.0
OE2 A:GLU751 4.6 33.9 1.0
CA A:ARG746 4.7 18.2 0.5
CB A:ASN741 4.7 21.7 1.0
N A:TYR740 4.7 18.2 1.0
CA A:ARG746 4.8 17.7 0.5
N A:TYR742 4.8 19.2 1.0
CA A:ASP743 4.8 18.6 1.0
C A:ASN741 4.9 20.6 1.0
N A:GLY744 4.9 16.6 1.0
CA A:ASN741 4.9 21.3 1.0
O A:ASP739 5.0 18.3 1.0

Reference:

D.Hunziker, S.C.Joachim, C.Ullmer, M.G.Rudolph. Crystal Structure of A Rat Autotaxin Complex To Be Published.
Page generated: Sat Feb 8 16:03:01 2025

Last articles

Na in 7G5T
Na in 7G5G
Na in 7G5P
Na in 7G5D
Na in 7G5R
Na in 7G5Q
Na in 7G5E
Na in 7G5F
Na in 7G5N
Na in 7G49
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy