Calcium in PDB 7jub: C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with Methyl-Mannoside

The structure of C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with Methyl-Mannoside, PDB code: 7jub was solved by W.I.Weis, H.Feinberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.70 / 1.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	32.97, 56.361, 34.217, 90, 112.01, 90
R / Rfree (%)	13.4 / 15.7

The binding sites of Calcium atom in the C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with Methyl-Mannoside (pdb code 7jub). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with Methyl-Mannoside, PDB code: 7jub:

Calcium binding site 1 out of 1 in the C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with Methyl-Mannoside


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with Methyl-Mannoside within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca801 b:3.7 occ:1.00 OD1 A:ASP748 2.3 4.0 1.0 OD1 A:ASN747 2.4 4.3 1.0 OD1 A:ASN727 2.4 4.7 1.0 OE1 A:GLU733 2.4 4.6 1.0 O A:ASP748 2.5 4.0 1.0 O3 A:MMA802 2.5 4.8 1.0 OE1 A:GLU725 2.5 5.2 1.0 O4 A:MMA802 2.6 5.0 1.0 CG A:ASP748 3.4 4.0 1.0 C4 A:MMA802 3.4 5.8 1.0 CD A:GLU725 3.4 5.4 1.0 CD A:GLU733 3.4 5.0 1.0 C3 A:MMA802 3.4 6.1 1.0 CG A:ASN727 3.4 5.5 1.0 CG A:ASN747 3.4 4.5 1.0 C A:ASP748 3.5 3.5 1.0 OE2 A:GLU725 3.7 6.2 1.0 OE2 A:GLU733 3.7 5.7 1.0 N A:ASP748 3.8 3.4 1.0 ND2 A:ASN747 3.8 5.5 1.0 ND2 A:ASN727 3.9 7.3 1.0 CA A:ASP748 4.0 3.5 1.0 OD2 A:ASP748 4.1 5.0 1.0 N A:ASN727 4.2 5.1 1.0 CB A:ASP748 4.3 4.3 1.0 CB A:TYR729 4.5 8.7 1.0 CB A:ASN727 4.6 5.6 1.0 C A:ASN747 4.6 3.5 1.0 CG A:GLU725 4.6 5.7 1.0 N A:TYR729 4.6 6.0 1.0 N A:ILE749 4.6 3.9 1.0 CB A:ASN747 4.7 4.8 1.0 N A:ASN728 4.7 5.2 1.0 CG A:GLU733 4.7 5.2 1.0 C2 A:MMA802 4.7 7.5 1.0 C5 A:MMA802 4.8 7.6 1.0 CA A:ASN727 4.8 5.7 1.0 CA A:ASN747 4.9 3.5 1.0 CB A:GLU733 4.9 5.1 1.0 O2 A:MMA802 5.0 8.3 1.0

H.Feinberg, S.A.F.Jegouzo, Y.Lasanajak, D.F.Smith, K.Drickamer, M.E.Taylor, W.I.Weis. Structural Analysis of Carbohydrate Binding By the Macrophage Mannose Receptor CD206 J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X