Calcium in PDB 7jug: C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with Man-ALPHA1-6MAN

The structure of C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with Man-ALPHA1-6MAN, PDB code: 7jug was solved by W.I.Weis, H.Feinberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.80 / 1.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	34.192, 54.249, 35.935, 90, 95.01, 90
R / Rfree (%)	13.7 / 16.8

The binding sites of Calcium atom in the C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with Man-ALPHA1-6MAN (pdb code 7jug). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with Man-ALPHA1-6MAN, PDB code: 7jug:

Calcium binding site 1 out of 1 in the C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with Man-ALPHA1-6MAN


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with Man-ALPHA1-6MAN within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca801 b:8.3 occ:1.00 OD1 A:ASP748 2.3 7.3 1.0 OD1 A:ASN727 2.4 9.9 1.0 OE1 A:GLU733 2.4 8.6 1.0 OD1 A:ASN747 2.4 7.8 1.0 O4 A:MAN802 2.5 9.9 0.2 O3 A:MAN802 2.5 11.2 0.8 O3 A:MAN802 2.5 9.1 0.2 O A:ASP748 2.5 7.4 1.0 OE1 A:GLU725 2.5 8.8 1.0 O4 A:MAN802 2.6 9.5 0.8 C3 A:MAN802 3.2 11.3 0.2 C4 A:MAN802 3.3 11.6 0.2 CG A:ASP748 3.4 7.3 1.0 C3 A:MAN802 3.4 15.3 0.8 C4 A:MAN802 3.4 14.8 0.8 CD A:GLU725 3.4 9.8 1.0 CG A:ASN727 3.4 11.1 1.0 CD A:GLU733 3.4 8.3 1.0 CG A:ASN747 3.5 7.5 1.0 C A:ASP748 3.5 6.2 1.0 OE2 A:GLU725 3.7 11.9 1.0 OE2 A:GLU733 3.8 9.8 1.0 N A:ASP748 3.8 6.1 1.0 ND2 A:ASN747 3.9 9.6 1.0 ND2 A:ASN727 3.9 13.2 1.0 CA A:ASP748 4.0 6.5 1.0 OD2 A:ASP748 4.1 8.5 1.0 N A:ASN727 4.2 9.0 1.0 CB A:ASP748 4.3 7.2 1.0 CB A:ASN727 4.6 12.0 1.0 C A:ASN747 4.7 5.7 1.0 N A:ASN728 4.7 10.2 1.0 CG A:GLU725 4.7 9.6 1.0 C5 A:MAN802 4.7 13.8 0.2 N A:ILE749 4.7 6.5 1.0 C2 A:MAN802 4.7 13.2 0.2 N A:TYR729 4.7 11.6 1.0 CG A:GLU733 4.7 8.1 1.0 CB A:ASN747 4.7 6.5 1.0 CB A:TYR729 4.7 15.2 1.0 C2 A:MAN802 4.8 20.9 0.8 CA A:ASN727 4.8 10.4 1.0 C5 A:MAN802 4.8 19.7 0.8 CB A:GLU733 4.9 8.1 1.0 CA A:ASN747 4.9 6.3 1.0 O2 A:MAN802 5.0 23.4 0.8 C A:ASN727 5.0 11.0 1.0

H.Feinberg, S.A.F.Jegouzo, Y.Lasanajak, D.F.Smith, K.Drickamer, M.E.Taylor, W.I.Weis. Structural Analysis of Carbohydrate Binding By the Macrophage Mannose Receptor CD206 J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X