Calcium in PDB 7jvi: Crystal Structure of A Beta-Helix Domain Retrieved From Capybara Gut Metagenome

The structure of Crystal Structure of A Beta-Helix Domain Retrieved From Capybara Gut Metagenome, PDB code: 7jvi was solved by M.P.Martins, W.C.Genoroso, M.N.Domingues, G.F.Persinoti, M.A.B.Morais, M.T.Murakami, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.38 / 1.85
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.979, 144.507, 169.492, 90, 90, 90
R / Rfree (%)	18.7 / 21.3

The binding sites of Calcium atom in the Crystal Structure of A Beta-Helix Domain Retrieved From Capybara Gut Metagenome (pdb code 7jvi). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of A Beta-Helix Domain Retrieved From Capybara Gut Metagenome, PDB code: 7jvi:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of A Beta-Helix Domain Retrieved From Capybara Gut Metagenome


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Beta-Helix Domain Retrieved From Capybara Gut Metagenome within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca901 b:27.8 occ:1.00 OE1 A:GLU336 2.2 29.1 1.0 O A:PRO304 2.3 24.6 1.0 O A:GLY308 2.4 24.8 1.0 OD2 A:ASP344 2.4 22.6 1.0 O A:HOH1227 2.4 28.0 1.0 O A:HOH1198 2.5 25.7 1.0 OD1 A:ASP344 2.7 26.6 1.0 CG A:ASP344 2.9 22.4 1.0 CD A:GLU336 3.4 34.4 1.0 C A:GLY308 3.4 31.1 1.0 C A:PRO304 3.5 24.9 1.0 CG A:GLU336 3.9 31.5 1.0 N A:GLY308 4.1 34.1 1.0 CB A:GLU336 4.2 29.5 1.0 CA A:GLY308 4.3 32.7 1.0 N A:ILE309 4.3 28.6 1.0 N A:GLY305 4.3 27.5 1.0 CB A:ASP344 4.3 23.3 1.0 CA A:GLY305 4.3 29.6 1.0 O A:HOH1241 4.4 40.3 1.0 OE2 A:GLU336 4.4 43.5 1.0 CA A:ILE309 4.4 28.5 1.0 O A:HOH1294 4.4 34.1 1.0 N A:PRO304 4.4 26.4 1.0 CA A:PRO304 4.5 26.5 1.0 C A:GLU303 4.6 26.4 1.0 O A:HOH1090 4.6 31.2 1.0 N A:GLY310 4.6 25.7 1.0 C A:GLY305 4.7 29.8 1.0 N A:GLU336 4.7 24.4 1.0 O A:GLU303 4.8 24.6 1.0 O A:TYR334 4.8 25.5 1.0 CD A:PRO304 4.8 26.2 1.0 C A:ILE309 4.9 26.7 1.0 CB A:PRO304 5.0 27.4 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of A Beta-Helix Domain Retrieved From Capybara Gut Metagenome


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Beta-Helix Domain Retrieved From Capybara Gut Metagenome within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca901 b:30.2 occ:1.00 O B:PRO304 2.3 29.3 1.0 OE1 B:GLU336 2.3 34.1 1.0 O B:HOH1136 2.3 31.6 1.0 O B:GLY308 2.4 28.7 1.0 OD2 B:ASP344 2.5 26.8 1.0 O B:HOH1134 2.5 26.3 1.0 OD1 B:ASP344 2.7 27.7 1.0 CG B:ASP344 2.9 27.5 1.0 CD B:GLU336 3.4 35.5 1.0 C B:GLY308 3.4 33.5 1.0 C B:PRO304 3.5 30.6 1.0 CG B:GLU336 4.0 33.1 1.0 N B:GLY308 4.1 35.0 1.0 O B:HOH1164 4.2 36.5 1.0 CA B:GLY308 4.3 33.6 1.0 N B:GLY305 4.3 32.0 1.0 CB B:GLU336 4.3 30.8 1.0 N B:ILE309 4.3 31.7 1.0 CA B:GLY305 4.3 33.1 1.0 N B:PRO304 4.3 31.4 1.0 CB B:ASP344 4.3 27.3 1.0 O B:HOH1200 4.4 34.5 1.0 CA B:ILE309 4.4 33.1 1.0 OE2 B:GLU336 4.4 44.0 1.0 CA B:PRO304 4.5 31.4 1.0 C B:GLU303 4.5 31.7 1.0 O B:HOH1030 4.6 35.0 1.0 N B:GLY310 4.6 31.7 1.0 C B:GLY305 4.7 34.4 1.0 O B:GLU303 4.7 33.1 1.0 CD B:PRO304 4.7 31.1 1.0 N B:GLU336 4.8 27.8 1.0 O B:TYR334 4.8 28.8 1.0 C B:ILE309 4.8 32.6 1.0 CB B:PRO304 4.9 30.6 1.0

M.P.Martins, W.C.Genoroso, M.N.Domingues, G.F.Persinoti, M.A.B.Morais, M.T.Murakami. Crystal Structure of A Beta-Helix Domain Retrieved From Capybara Gut Metagenome To Be Published.