Calcium in PDB 7kdd: Hcmv Postfusion Gb in Complex with SM5-1 Fab

The binding sites of Calcium atom in the Hcmv Postfusion Gb in Complex with SM5-1 Fab (pdb code 7kdd). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Hcmv Postfusion Gb in Complex with SM5-1 Fab, PDB code: 7kdd:

Calcium binding site 1 out of 1 in the Hcmv Postfusion Gb in Complex with SM5-1 Fab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Hcmv Postfusion Gb in Complex with SM5-1 Fab within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1011 b:54.5 occ:1.00 OD2 A:ASP509 2.7 51.6 1.0 OD2 B:ASP509 2.7 51.5 1.0 OD2 C:ASP509 2.8 52.6 1.0 CG A:ASP509 3.5 51.6 1.0 CG B:ASP509 3.6 51.5 1.0 OD1 A:ASP509 3.6 51.6 1.0 CG C:ASP509 3.6 52.6 1.0 OD1 B:ASP509 3.7 51.5 1.0 OD1 C:ASP509 3.7 52.6 1.0 OG1 B:THR513 4.5 59.3 1.0 OG1 C:THR513 4.5 61.4 1.0 OG1 A:THR513 4.6 59.1 1.0 CB A:ASP509 5.0 51.6 1.0 CB B:ASP509 5.0 51.5 1.0

Y.Liu, K.P.Heim, Y.Che, X.Chi, X.Qiu, S.Han, P.R.Dormitzer, X.Yang. Prefusion Structure of Human Cytomegalovirus Glycoprotein B and Structural Basis For Membrane Fusion. Sci Adv V. 7 2021.
ISSN: ESSN 2375-2548
PubMed: 33674318
DOI: 10.1126/SCIADV.ABF3178