Calcium in PDB 7kdp: Hcmv Prefusion Gb in Complex with Fusion Inhibitor Way-174865

The structure of Hcmv Prefusion Gb in Complex with Fusion Inhibitor Way-174865 also contains other interesting chemical elements:

Fluorine

(F)

18 atoms

The binding sites of Calcium atom in the Hcmv Prefusion Gb in Complex with Fusion Inhibitor Way-174865 (pdb code 7kdp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Hcmv Prefusion Gb in Complex with Fusion Inhibitor Way-174865, PDB code: 7kdp:

Calcium binding site 1 out of 1 in the Hcmv Prefusion Gb in Complex with Fusion Inhibitor Way-174865


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Hcmv Prefusion Gb in Complex with Fusion Inhibitor Way-174865 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1012 b:105.4 occ:1.00 CB A:ASP509 4.4 94.7 1.0 CB B:ASP509 4.4 94.7 1.0 CB C:ASP509 4.4 94.7 1.0 CG A:ASP509 4.9 94.7 1.0 CG B:ASP509 4.9 94.7 1.0 CG C:ASP509 4.9 94.7 1.0 OD2 B:ASP509 4.9 94.7 1.0 OD2 A:ASP509 4.9 94.7 1.0 OD2 C:ASP509 4.9 94.7 1.0

Y.Liu, K.P.Heim, Y.Che, X.Chi, X.Qiu, S.Han, P.R.Dormitzer, X.Yang. Prefusion Structure of Human Cytomegalovirus Glycoprotein B and Structural Basis For Membrane Fusion. Sci Adv V. 7 2021.
ISSN: ESSN 2375-2548
PubMed: 33674318
DOI: 10.1126/SCIADV.ABF3178