Calcium in PDB 7kgz: Fmn-Binding Beta-Glucuronidase From Roseburia Hominis

The structure of Fmn-Binding Beta-Glucuronidase From Roseburia Hominis, PDB code: 7kgz was solved by M.E.Walker, M.R.Redinbo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.07 / 2.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	54.354, 161.142, 86.947, 90, 107.33, 90
R / Rfree (%)	14.1 / 19.5

The binding sites of Calcium atom in the Fmn-Binding Beta-Glucuronidase From Roseburia Hominis (pdb code 7kgz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Fmn-Binding Beta-Glucuronidase From Roseburia Hominis, PDB code: 7kgz:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Fmn-Binding Beta-Glucuronidase From Roseburia Hominis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Fmn-Binding Beta-Glucuronidase From Roseburia Hominis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca801 b:24.3 occ:1.00 O A:GLY39 2.2 25.7 1.0 OD1 A:ASP42 2.3 29.4 1.0 OD1 A:ASP38 2.3 30.3 1.0 O A:ASP35 2.5 23.7 1.0 OD2 A:ASP512 2.5 23.5 1.0 O A:HOH1132 2.6 29.1 1.0 OD1 A:ASP512 2.6 24.3 1.0 CG A:ASP512 2.9 25.2 1.0 CG A:ASP42 3.4 25.7 1.0 C A:GLY39 3.4 26.5 1.0 CG A:ASP38 3.4 31.8 1.0 C A:ASP35 3.5 21.1 1.0 N A:GLY39 3.8 27.6 1.0 OD2 A:ASP42 3.9 30.3 1.0 OD2 A:ASP38 4.0 33.9 1.0 N A:TYR43 4.1 21.7 1.0 CA A:ASP35 4.2 18.5 1.0 CA A:GLY39 4.2 24.9 1.0 N A:ASP42 4.2 21.7 1.0 C A:ASP38 4.2 26.7 1.0 N A:ASP38 4.3 24.7 1.0 CB A:ASP512 4.4 23.8 1.0 N A:GLY40 4.4 28.6 1.0 C A:ASP42 4.5 22.9 1.0 CB A:ASP35 4.5 20.2 1.0 CB A:ASP38 4.6 29.0 1.0 CA A:ASP38 4.6 27.1 1.0 N A:GLY36 4.6 20.1 1.0 N A:ASN41 4.6 28.7 1.0 CB A:ASP42 4.6 20.6 1.0 CA A:ASP42 4.6 24.0 1.0 CA A:GLY40 4.6 25.4 1.0 CA A:TYR43 4.7 23.9 1.0 C A:GLY40 4.8 28.1 1.0 O A:ASP38 4.8 28.3 1.0 CA A:GLY36 4.8 19.7 1.0 O A:ASP512 4.8 22.6 1.0 CB A:TYR43 4.8 18.2 1.0

Calcium binding site 2 out of 2 in the Fmn-Binding Beta-Glucuronidase From Roseburia Hominis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Fmn-Binding Beta-Glucuronidase From Roseburia Hominis within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca801 b:28.2 occ:1.00 OD1 B:ASP38 2.3 33.7 1.0 O B:ASP35 2.3 24.6 1.0 OD1 B:ASP42 2.4 31.5 1.0 O B:GLY39 2.4 23.5 1.0 OD2 B:ASP512 2.5 27.9 1.0 OD1 B:ASP512 2.6 23.9 1.0 CG B:ASP512 2.9 23.8 1.0 C B:ASP35 3.4 26.2 1.0 CG B:ASP38 3.4 31.8 1.0 C B:GLY39 3.5 27.9 1.0 CG B:ASP42 3.6 29.1 1.0 N B:GLY39 3.9 29.2 1.0 OD2 B:ASP38 4.0 31.9 1.0 CA B:ASP35 4.0 24.7 1.0 N B:TYR43 4.0 29.0 1.0 OD2 B:ASP42 4.2 33.8 1.0 C B:ASP38 4.3 30.5 1.0 CA B:GLY39 4.3 24.8 1.0 N B:ASP42 4.3 28.0 1.0 N B:ASP38 4.4 28.0 1.0 N B:GLY36 4.4 25.1 1.0 C B:ASP42 4.4 28.2 1.0 CB B:ASP512 4.4 22.7 1.0 CB B:ASP35 4.5 27.4 1.0 CA B:TYR43 4.5 27.7 1.0 N B:GLY40 4.6 27.6 1.0 CA B:GLY36 4.6 23.9 1.0 CA B:ASP38 4.6 26.4 1.0 CB B:ASP38 4.6 24.9 1.0 CA B:ASP42 4.7 26.1 1.0 CB B:TYR43 4.7 26.5 1.0 N B:ASN41 4.7 28.3 1.0 CB B:ASP42 4.8 22.5 1.0 CA B:GLY40 4.8 28.4 1.0 O B:ASP38 4.8 35.2 1.0 N B:GLN37 4.9 24.1 1.0 C B:GLY40 4.9 27.8 1.0 C B:GLY36 5.0 24.3 1.0 O B:ASP42 5.0 29.8 1.0 O B:ASP512 5.0 21.3 1.0

M.E.Walker, M.R.Redinbo. Fmn-Binding Beta-Glucuronidase From Roseburia Hominis To Be Published.