Calcium in PDB 7kmq: Crystal Structure of the GH95 Alpha-L-1,2-Fucosidase (XAC1774) From Xanthomonas Citri

The structure of Crystal Structure of the GH95 Alpha-L-1,2-Fucosidase (XAC1774) From Xanthomonas Citri, PDB code: 7kmq was solved by P.S.Vieira, M.T.Murakami, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.78 / 2.05
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	103.6, 103.52, 173.4, 90, 90, 90
R / Rfree (%)	17.4 / 19.1

The binding sites of Calcium atom in the Crystal Structure of the GH95 Alpha-L-1,2-Fucosidase (XAC1774) From Xanthomonas Citri (pdb code 7kmq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of the GH95 Alpha-L-1,2-Fucosidase (XAC1774) From Xanthomonas Citri, PDB code: 7kmq:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of the GH95 Alpha-L-1,2-Fucosidase (XAC1774) From Xanthomonas Citri


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the GH95 Alpha-L-1,2-Fucosidase (XAC1774) From Xanthomonas Citri within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca804 b:47.2 occ:1.00 O A:GLN374 2.4 36.0 1.0 O A:GLY65 2.4 38.7 1.0 O A:SER368 2.5 32.3 1.0 OD2 A:ASP85 2.6 35.9 1.0 O A:HOH919 3.0 36.5 1.0 C A:GLN374 3.4 35.5 1.0 OG1 A:THR373 3.4 34.7 1.0 CG2 A:ILE381 3.4 30.2 1.0 C A:SER368 3.5 35.7 1.0 CG A:ASP85 3.6 35.9 1.0 C A:GLY65 3.6 39.3 1.0 N A:GLN374 3.7 37.2 1.0 CB A:ASP85 3.8 33.6 1.0 CB A:THR373 3.9 37.0 1.0 CA A:GLN374 3.9 37.0 1.0 O A:PRO375 4.1 33.5 1.0 CB A:GLN374 4.2 32.9 1.0 N A:SER369 4.3 30.9 1.0 CA A:SER369 4.3 34.6 1.0 C A:PRO375 4.3 31.9 1.0 CA A:SER368 4.4 34.0 1.0 C A:THR373 4.4 37.8 1.0 CA A:ARG66 4.4 35.4 1.0 N A:PRO375 4.4 34.2 1.0 N A:ARG66 4.5 37.0 1.0 CA A:GLY65 4.6 38.2 1.0 CA A:PRO375 4.7 35.5 1.0 N A:ALA376 4.7 34.4 1.0 CA A:THR373 4.8 38.4 1.0 OD1 A:ASP85 4.8 38.2 1.0 CB A:ILE381 4.9 31.4 1.0 CB A:SER368 5.0 32.5 1.0 CG2 A:THR373 5.0 35.9 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of the GH95 Alpha-L-1,2-Fucosidase (XAC1774) From Xanthomonas Citri


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the GH95 Alpha-L-1,2-Fucosidase (XAC1774) From Xanthomonas Citri within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca804 b:43.2 occ:1.00 O B:GLY65 2.3 35.4 1.0 O B:GLN374 2.5 31.3 1.0 OD2 B:ASP85 2.5 33.5 1.0 O B:SER368 2.6 31.3 1.0 O B:HOH920 2.9 34.1 1.0 OG1 B:THR373 3.4 35.4 1.0 CG2 B:ILE381 3.4 31.0 1.0 C B:GLN374 3.4 29.4 1.0 CG B:ASP85 3.5 37.1 1.0 C B:GLY65 3.5 33.8 1.0 C B:SER368 3.5 30.8 1.0 N B:GLN374 3.6 28.7 1.0 CB B:ASP85 3.7 32.6 1.0 CB B:THR373 3.8 32.1 1.0 CA B:GLN374 3.9 33.9 1.0 CB B:GLN374 4.2 31.2 1.0 N B:SER369 4.3 31.3 1.0 CA B:SER369 4.3 29.2 1.0 O B:PRO375 4.3 32.5 1.0 CA B:ARG66 4.3 38.0 1.0 N B:ARG66 4.4 35.9 1.0 C B:THR373 4.4 30.4 1.0 CA B:SER368 4.4 32.4 1.0 C B:PRO375 4.5 33.3 1.0 CA B:GLY65 4.5 34.6 1.0 N B:PRO375 4.5 31.4 1.0 OD1 B:ASP85 4.6 38.6 1.0 CA B:THR373 4.7 34.2 1.0 CA B:PRO375 4.9 33.5 1.0 CG2 B:THR373 4.9 34.3 1.0 N B:ALA376 4.9 30.1 1.0 CB B:ILE381 4.9 34.6 1.0 CB B:ARG66 5.0 39.2 1.0

P.S.Vieira, M.T.Murakami. Crystal Structure of the GH95 Alpha-L-1,2-Fucosidase (XAC1774) From Xanthomonas Citri To Be Published.