Calcium in PDB 7knv: Solution uc(Nmr) Structure of CDHR3 Extracellular Domain EC1

The binding sites of Calcium atom in the Solution uc(Nmr) Structure of CDHR3 Extracellular Domain EC1 (pdb code 7knv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Solution uc(Nmr) Structure of CDHR3 Extracellular Domain EC1, PDB code: 7knv:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Solution uc(Nmr) Structure of CDHR3 Extracellular Domain EC1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution uc(Nmr) Structure of CDHR3 Extracellular Domain EC1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:0.0 occ:1.00 HB3 A:PHE94 2.1 0.0 1.0 OD1 A:ASP125 2.3 0.0 1.0 OE2 A:GLU33 2.3 0.0 1.0 CG A:ASP125 2.5 0.0 1.0 OE2 A:GLU95 2.6 0.0 1.0 HA A:ASP125 2.8 0.0 1.0 OD2 A:ASP125 2.9 0.0 1.0 CB A:PHE94 3.0 0.0 1.0 HD2 A:PHE94 3.0 0.0 1.0 HB2 A:PHE94 3.1 0.0 1.0 H A:VAL126 3.2 0.0 1.0 CD A:GLU33 3.3 0.0 1.0 CA A:CA202 3.3 0.0 1.0 CB A:ASP125 3.4 0.0 1.0 CD A:GLU95 3.4 0.0 1.0 HB2 A:ASP125 3.5 0.0 1.0 CG A:PHE94 3.5 0.0 1.0 CD2 A:PHE94 3.5 0.0 1.0 CA A:ASP125 3.5 0.0 1.0 OE1 A:GLU95 3.7 0.0 1.0 OE1 A:GLU33 3.9 0.0 1.0 N A:VAL126 3.9 0.0 1.0 HG3 A:GLU33 4.0 0.0 1.0 H A:GLU95 4.0 0.0 1.0 H A:PHE94 4.0 0.0 1.0 CA A:PHE94 4.2 0.0 1.0 C A:ASP125 4.2 0.0 1.0 CG A:GLU33 4.3 0.0 1.0 HG11 A:VAL126 4.3 0.0 1.0 HB3 A:ASP125 4.4 0.0 1.0 O A:VAL126 4.5 0.0 1.0 N A:GLU95 4.5 0.0 1.0 HG3 A:GLU95 4.5 0.0 1.0 N A:PHE94 4.5 0.0 1.0 CG A:GLU95 4.6 0.0 1.0 C A:PHE94 4.6 0.0 1.0 CD1 A:PHE94 4.7 0.0 1.0 CE2 A:PHE94 4.7 0.0 1.0 N A:ASP125 4.7 0.0 1.0 HG2 A:GLU33 4.8 0.0 1.0 CA A:CA203 4.9 0.0 1.0

Calcium binding site 2 out of 3 in the Solution uc(Nmr) Structure of CDHR3 Extracellular Domain EC1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution uc(Nmr) Structure of CDHR3 Extracellular Domain EC1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:0.0 occ:1.00 OE2 A:GLU95 2.8 0.0 1.0 OE1 A:GLU95 3.1 0.0 1.0 OE2 A:GLU33 3.2 0.0 1.0 CA A:CA201 3.3 0.0 1.0 CD A:GLU95 3.3 0.0 1.0 OE1 A:GLU33 3.4 0.0 1.0 CD A:GLU33 3.7 0.0 1.0 HG11 A:VAL126 3.9 0.0 1.0 O A:VAL126 4.1 0.0 1.0 HG3 A:GLU128 4.3 0.0 1.0 OE2 A:GLU128 4.3 0.0 1.0 HB3 A:PHE94 4.4 0.0 1.0 H A:VAL126 4.4 0.0 1.0 OD1 A:ASP125 4.4 0.0 1.0 HG13 A:VAL126 4.5 0.0 1.0 HG2 A:GLU128 4.5 0.0 1.0 H A:PHE94 4.6 0.0 1.0 H A:GLU95 4.7 0.0 1.0 CG1 A:VAL126 4.7 0.0 1.0 CG A:GLU95 4.8 0.0 1.0 CG A:GLU128 4.8 0.0 1.0 HG2 A:GLU95 4.9 0.0 1.0

Calcium binding site 3 out of 3 in the Solution uc(Nmr) Structure of CDHR3 Extracellular Domain EC1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Solution uc(Nmr) Structure of CDHR3 Extracellular Domain EC1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca203 b:0.0 occ:1.00 HA A:ASN127 2.1 0.0 1.0 OD1 A:ASN127 2.9 0.0 1.0 CA A:ASN127 3.1 0.0 1.0 O A:VAL126 3.1 0.0 1.0 OD1 A:ASP125 3.2 0.0 1.0 H A:GLU128 3.3 0.0 1.0 C A:VAL126 3.5 0.0 1.0 N A:ASN127 3.5 0.0 1.0 CG A:ASN127 3.8 0.0 1.0 CG A:ASP125 3.9 0.0 1.0 CB A:ASN127 4.0 0.0 1.0 HG3 A:GLU128 4.0 0.0 1.0 N A:GLU128 4.0 0.0 1.0 OD2 A:ASP125 4.0 0.0 1.0 C A:ASN127 4.1 0.0 1.0 HB3 A:ASN127 4.2 0.0 1.0 H A:ASN127 4.3 0.0 1.0 CA A:VAL126 4.7 0.0 1.0 N A:VAL126 4.7 0.0 1.0 H A:VAL126 4.8 0.0 1.0 CA A:CA201 4.9 0.0 1.0 HB2 A:ASN127 4.9 0.0 1.0 ND2 A:ASN127 5.0 0.0 1.0

W.Lee, R.O.Frederick, M.Tonelli, A.C.Palmenberg. Solution uc(Nmr) Determination of the CDHR3 Rhinovirus-C Binding Domain, EC1 Viruses V. 13 159 2021.
ISSN: ISSN 1999-4915
DOI: 10.3390/V13020159