Calcium in PDB 7kwo: Rfviiifc-Vwf-Xten (BIVV001)

Other elements in 7kwo:

The structure of Rfviiifc-Vwf-Xten (BIVV001) also contains other interesting chemical elements:

Copper (Cu) 1 atom
Zinc (Zn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Rfviiifc-Vwf-Xten (BIVV001) (pdb code 7kwo). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Rfviiifc-Vwf-Xten (BIVV001), PDB code: 7kwo:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 7kwo

Go back to Calcium Binding Sites List in 7kwo
Calcium binding site 1 out of 2 in the Rfviiifc-Vwf-Xten (BIVV001)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Rfviiifc-Vwf-Xten (BIVV001) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2603

b:3.2
occ:1.00
O A:LYS107 2.4 6.5 1.0
OD2 A:ASP125 2.5 9.0 1.0
O A:GLU122 2.5 11.1 1.0
OD1 A:ASP125 2.5 9.0 1.0
OD1 A:ASP126 2.6 11.9 1.0
CG A:ASP125 2.8 9.0 1.0
C A:LYS107 3.6 6.5 1.0
CG A:ASP126 3.6 11.9 1.0
C A:GLU122 3.7 11.1 1.0
OD2 A:ASP126 3.9 11.9 1.0
OD2 A:ASP116 4.2 9.3 1.0
O A:ALA112 4.2 12.9 1.0
CA A:LYS123 4.3 10.0 1.0
CB A:ASP125 4.3 9.0 1.0
N A:LYS123 4.4 10.0 1.0
CA A:LYS107 4.5 6.5 1.0
N A:ALA108 4.5 5.9 1.0
CB A:GLU110 4.6 5.8 1.0
CB A:LYS107 4.6 6.5 1.0
CA A:ALA108 4.6 5.9 1.0
N A:ASP126 4.6 11.9 1.0
OE1 A:GLU110 4.7 5.8 1.0
CA A:GLU122 4.7 11.1 1.0
OG1 A:THR118 4.8 4.6 1.0
CB A:GLU122 4.9 11.1 1.0
N A:GLU110 4.9 5.8 1.0
N A:GLY111 4.9 4.1 1.0
C A:LYS123 4.9 10.0 1.0
CB A:ASP126 4.9 11.9 1.0
C A:ALA108 5.0 5.9 1.0
N A:ASP125 5.0 9.0 1.0

Calcium binding site 2 out of 2 in 7kwo

Go back to Calcium Binding Sites List in 7kwo
Calcium binding site 2 out of 2 in the Rfviiifc-Vwf-Xten (BIVV001)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Rfviiifc-Vwf-Xten (BIVV001) within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Ca1702

b:73.4
occ:1.00
OD1 V:ASP1006 2.4 73.1 1.0
OD1 V:ASN1005 2.4 66.5 1.0
OD1 V:ASP1000 2.4 62.1 1.0
O V:ILE1002 2.5 60.2 1.0
OD1 V:ASN998 2.5 75.5 1.0
OD2 V:ASP879 2.5 70.8 1.0
CG V:ASP1006 3.2 73.1 1.0
CG V:ASP1000 3.3 62.1 1.0
CG V:ASN998 3.5 75.5 1.0
CG V:ASN1005 3.5 66.5 1.0
OD2 V:ASP1000 3.5 62.1 1.0
N V:ASP1006 3.6 73.1 1.0
C V:ILE1002 3.7 60.2 1.0
CG V:ASP879 3.7 70.8 1.0
C V:ASN1005 3.7 66.5 1.0
CA V:ASP1006 3.8 73.1 1.0
OD2 V:ASP1006 3.8 73.1 1.0
ND2 V:ASN998 3.9 75.5 1.0
O V:ASN1005 3.9 66.5 1.0
CB V:ASP1006 4.1 73.1 1.0
N V:ILE1002 4.2 60.2 1.0
CA V:ILE1002 4.3 60.2 1.0
CB V:ASP879 4.3 70.8 1.0
ND2 V:ASN1005 4.3 66.5 1.0
N V:ASN998 4.4 75.5 1.0
CB V:ILE1002 4.4 60.2 1.0
N V:ASP1000 4.4 62.1 1.0
CA V:ASN1005 4.5 66.5 1.0
CB V:ASN1005 4.5 66.5 1.0
N V:ASN1005 4.5 66.5 1.0
CB V:ASP1000 4.6 62.1 1.0
N V:PHE999 4.7 72.9 1.0
OD1 V:ASP879 4.7 70.8 1.0
N V:GLN1003 4.8 75.5 1.0
CB V:ASN998 4.8 75.5 1.0
O V:GLN1003 4.9 75.5 1.0
CA V:ASN998 5.0 75.5 1.0
N V:GLY1001 5.0 66.3 1.0
C V:GLN1003 5.0 75.5 1.0
CA V:ASP1000 5.0 62.1 1.0

Reference:

J.R.Fuller, K.E.Knockenhauer, N.C.Leksa, R.T.Peters, J.Batchelor. Molecular Determinants of the Factor VIII/Von Willebrand Factor Complex Revealed By BIVV001 Cryo-Electron Microscopy. Blood 2021.
ISSN: ESSN 1528-0020
PubMed: 33569592
DOI: 10.1182/BLOOD.2020009197
Page generated: Sat Apr 17 14:18:47 2021

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