Calcium in PDB 7l62: C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with L-Fucose-(Alpha 1-2)-D-Galactose-(BETA1-4)-D-Glucose

The structure of C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with L-Fucose-(Alpha 1-2)-D-Galactose-(BETA1-4)-D-Glucose, PDB code: 7l62 was solved by W.I.Weis, H.Feinberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.95 / 1.55
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	34.084, 54.065, 35.876, 90, 95, 90
R / Rfree (%)	13.6 / 16.7

The binding sites of Calcium atom in the C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with L-Fucose-(Alpha 1-2)-D-Galactose-(BETA1-4)-D-Glucose (pdb code 7l62). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with L-Fucose-(Alpha 1-2)-D-Galactose-(BETA1-4)-D-Glucose, PDB code: 7l62:

Calcium binding site 1 out of 1 in the C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with L-Fucose-(Alpha 1-2)-D-Galactose-(BETA1-4)-D-Glucose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with L-Fucose-(Alpha 1-2)-D-Galactose-(BETA1-4)-D-Glucose within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca800 b:9.3 occ:1.00 OD1 A:ASP748 2.3 9.7 1.0 OD1 A:ASN727 2.4 11.9 1.0 OD1 A:ASN747 2.4 8.7 1.0 O A:ASP748 2.5 9.2 1.0 OE1 A:GLU733 2.5 10.0 1.0 O4 B:FUC3 2.5 12.2 1.0 O3 B:FUC3 2.5 10.7 1.0 OE1 A:GLU725 2.5 11.7 1.0 CG A:ASP748 3.3 9.6 1.0 C4 B:FUC3 3.4 14.0 1.0 CD A:GLU725 3.4 13.2 1.0 CG A:ASN727 3.4 12.5 1.0 CD A:GLU733 3.4 10.7 1.0 CG A:ASN747 3.4 8.1 1.0 C3 B:FUC3 3.5 14.2 1.0 C A:ASP748 3.5 7.6 1.0 OE2 A:GLU725 3.7 14.2 1.0 OE2 A:GLU733 3.8 11.7 1.0 N A:ASP748 3.8 7.4 1.0 ND2 A:ASN747 3.8 10.1 1.0 ND2 A:ASN727 4.0 13.9 1.0 CA A:ASP748 4.0 7.7 1.0 OD2 A:ASP748 4.1 10.9 1.0 C2 B:FUC3 4.2 17.8 1.0 N A:ASN727 4.2 10.6 1.0 CB A:ASP748 4.3 9.1 1.0 CB A:ASN727 4.6 13.2 1.0 C A:ASN747 4.7 7.5 1.0 N A:ILE749 4.7 6.7 1.0 CG A:GLU725 4.7 12.4 1.0 N A:ASN728 4.7 11.1 1.0 CG A:GLU733 4.7 10.2 1.0 N A:TYR729 4.7 12.6 1.0 CB A:ASN747 4.7 8.1 1.0 CB A:TYR729 4.8 14.6 1.0 C5 B:FUC3 4.8 16.4 1.0 CA A:ASN727 4.8 12.0 1.0 CB A:GLU733 4.8 9.4 1.0 CA A:ASN747 4.9 7.1 1.0 O2 B:FUC3 5.0 19.5 1.0 C A:ASN727 5.0 11.8 1.0

H.Feinberg, S.A.F.Jegouzo, Y.Lasanajak, D.F.Smith, K.Drickamer, M.E.Taylor, W.I.Weis. Structural Analysis of Carbohydrate Binding By the Macrophage Mannose Receptor CD206 J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X