Calcium in PDB 7l63: C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with L-Fucose-(Alpha 1-2)-D-Galactose-(BETA1-4)-D-Glucose

The structure of C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with L-Fucose-(Alpha 1-2)-D-Galactose-(BETA1-4)-D-Glucose, PDB code: 7l63 was solved by W.I.Weis, H.Feinberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.45 / 1.65
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	34.514, 54.479, 37.172, 90, 101.31, 90
R / Rfree (%)	17.6 / 20.9

The binding sites of Calcium atom in the C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with L-Fucose-(Alpha 1-2)-D-Galactose-(BETA1-4)-D-Glucose (pdb code 7l63). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with L-Fucose-(Alpha 1-2)-D-Galactose-(BETA1-4)-D-Glucose, PDB code: 7l63:

Calcium binding site 1 out of 1 in the C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with L-Fucose-(Alpha 1-2)-D-Galactose-(BETA1-4)-D-Glucose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of C-Type Carbohydrate-Recognition Domain 4 of the Mannose Receptor Complexed with L-Fucose-(Alpha 1-2)-D-Galactose-(BETA1-4)-D-Glucose within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca800 b:16.7 occ:1.00 OD1 A:ASP748 2.4 18.3 1.0 OD1 A:ASN747 2.4 16.9 1.0 OD1 A:ASN727 2.4 18.5 1.0 OE1 A:GLU733 2.5 17.4 1.0 O A:ASP748 2.5 17.7 1.0 O2 B:FUC3 2.5 16.9 1.0 OE1 A:GLU725 2.6 22.6 1.0 O3 B:FUC3 2.6 17.8 1.0 C2 B:FUC3 3.3 17.2 1.0 CG A:ASP748 3.4 17.4 1.0 C3 B:FUC3 3.4 18.0 1.0 CD A:GLU733 3.4 19.2 1.0 CG A:ASN727 3.4 19.1 1.0 CG A:ASN747 3.4 17.8 1.0 CD A:GLU725 3.4 22.9 1.0 C A:ASP748 3.5 18.0 1.0 OE2 A:GLU733 3.7 20.6 1.0 OE2 A:GLU725 3.8 22.1 1.0 N A:ASP748 3.8 17.4 1.0 ND2 A:ASN747 3.9 22.5 1.0 ND2 A:ASN727 4.0 19.9 1.0 CA A:ASP748 4.1 17.8 1.0 OD2 A:ASP748 4.1 18.5 1.0 N A:ASN727 4.3 17.2 1.0 CB A:ASP748 4.3 18.1 1.0 CB A:ASN727 4.6 20.2 1.0 C A:ASN747 4.6 17.3 1.0 N A:ILE749 4.7 16.2 1.0 CG A:GLU725 4.7 19.9 1.0 CG A:GLU733 4.7 18.9 1.0 N A:TYR729 4.7 18.5 1.0 C1 B:FUC3 4.7 20.8 1.0 CB A:ASN747 4.7 17.1 1.0 N A:ASN728 4.7 19.2 1.0 CB A:TYR729 4.8 20.9 1.0 C4 B:FUC3 4.8 20.4 1.0 CA A:ASN727 4.8 20.6 1.0 CB A:GLU733 4.9 18.9 1.0 CA A:ASN747 4.9 15.3 1.0

H.Feinberg, S.A.F.Jegouzo, Y.Lasanajak, D.F.Smith, K.Drickamer, M.E.Taylor, W.I.Weis. Structural Analysis of Carbohydrate Binding By the Macrophage Mannose Receptor CD206 J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X