Atomistry » Calcium » PDB 7lry-7m41 » 7lsa
Atomistry »
  Calcium »
    PDB 7lry-7m41 »
      7lsa »

Calcium in PDB 7lsa: Ruminococcus Bromii AMY12 with Maltoheptaose

Enzymatic activity of Ruminococcus Bromii AMY12 with Maltoheptaose

All present enzymatic activity of Ruminococcus Bromii AMY12 with Maltoheptaose:
3.2.1.41;

Protein crystallography data

The structure of Ruminococcus Bromii AMY12 with Maltoheptaose, PDB code: 7lsa was solved by N.M.Koropatkin, D.W.Cockburn, H.A.Brown, R.D.Kibler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.46 / 1.76
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.977, 97.96, 167.089, 90, 90, 90
R / Rfree (%) 15.9 / 20.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Ruminococcus Bromii AMY12 with Maltoheptaose (pdb code 7lsa). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Ruminococcus Bromii AMY12 with Maltoheptaose, PDB code: 7lsa:

Calcium binding site 1 out of 1 in 7lsa

Go back to Calcium Binding Sites List in 7lsa
Calcium binding site 1 out of 1 in the Ruminococcus Bromii AMY12 with Maltoheptaose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Ruminococcus Bromii AMY12 with Maltoheptaose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca810

b:18.8
occ:1.00
OE2 A:GLU268 2.2 19.3 1.0
O A:PHE263 2.3 18.4 1.0
OD1 A:ASP262 2.3 17.9 1.0
O A:HOH1289 2.5 21.6 1.0
O A:HOH1058 2.5 21.4 1.0
OE1 A:GLU288 2.5 16.8 1.0
O A:HOH982 2.5 16.7 1.0
CD A:GLU268 3.3 20.0 1.0
CD A:GLU288 3.4 17.3 1.0
CG A:ASP262 3.4 18.2 1.0
C A:PHE263 3.5 17.5 1.0
OE2 A:GLU288 3.5 17.7 1.0
N A:PHE263 3.8 16.3 1.0
O A:HOH1074 3.9 19.1 1.0
CG A:GLU268 3.9 20.0 1.0
OD2 A:ASP262 4.0 19.0 1.0
CA A:PHE263 4.3 16.6 1.0
OE1 A:GLU268 4.3 20.4 1.0
O A:VAL266 4.4 21.1 1.0
C A:ASP262 4.4 16.3 1.0
N A:GLY289 4.5 17.6 1.0
N A:GLN264 4.5 18.1 1.0
CB A:ASP262 4.6 17.4 1.0
CA A:ASP262 4.6 16.6 1.0
O A:HOH1361 4.7 21.5 1.0
OD1 A:ASN167 4.8 21.9 1.0
CG A:GLU288 4.8 17.1 1.0
CA A:GLN264 4.8 19.5 1.0
CA A:ASN167 4.8 21.7 1.0
CD1 A:PHE263 5.0 15.9 1.0
CA A:GLU288 5.0 17.4 1.0

Reference:

D.W.Cockburn, R.Kibler, H.A.Brown, R.Duvall, S.Morais, E.Bayer, N.M.Koropatkin. Structure and Substrate Recognition By the Ruminococcus Bromii Amylosome Pullulanases. J.Struct.Biol. V. 213 07765 2021.
ISSN: ESSN 1095-8657
PubMed: 34186214
DOI: 10.1016/J.JSB.2021.107765
Page generated: Fri Jul 19 01:46:13 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy