Calcium in PDB 7lxh: Bacillus Cereus Dna Glycosylase Alkd Bound to A CC1065-Adenine Nucleobase Adduct and Dna Containing An Abasic Site

The structure of Bacillus Cereus Dna Glycosylase Alkd Bound to A CC1065-Adenine Nucleobase Adduct and Dna Containing An Abasic Site, PDB code: 7lxh was solved by E.A.Mullins, B.F.Eichman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.84 / 1.67
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	124.572, 55.609, 48.557, 90, 110.73, 90
R / Rfree (%)	14.9 / 18.3

The binding sites of Calcium atom in the Bacillus Cereus Dna Glycosylase Alkd Bound to A CC1065-Adenine Nucleobase Adduct and Dna Containing An Abasic Site (pdb code 7lxh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Bacillus Cereus Dna Glycosylase Alkd Bound to A CC1065-Adenine Nucleobase Adduct and Dna Containing An Abasic Site, PDB code: 7lxh:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Bacillus Cereus Dna Glycosylase Alkd Bound to A CC1065-Adenine Nucleobase Adduct and Dna Containing An Abasic Site


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Bacillus Cereus Dna Glycosylase Alkd Bound to A CC1065-Adenine Nucleobase Adduct and Dna Containing An Abasic Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:32.1 occ:1.00 O A:HOH501 2.4 25.9 1.0 OD1 A:ASP142 2.5 39.0 1.0 OD2 A:ASP142 3.0 41.8 1.0 CG A:ASP142 3.1 49.6 1.0 O A:HOH616 3.4 47.5 1.0 HE22 A:GLN147 4.2 27.9 1.0 HA A:ALA140 4.3 27.4 1.0 HE21 A:GLN147 4.6 27.9 1.0 O A:ILE139 4.6 20.3 1.0 CB A:ASP142 4.6 39.0 1.0 NE2 A:GLN147 4.7 23.2 1.0 O A:ALA140 4.8 24.2 1.0 H A:ASP142 4.8 25.5 1.0 HA A:ASP142 4.9 30.4 1.0

Calcium binding site 2 out of 2 in the Bacillus Cereus Dna Glycosylase Alkd Bound to A CC1065-Adenine Nucleobase Adduct and Dna Containing An Abasic Site


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Bacillus Cereus Dna Glycosylase Alkd Bound to A CC1065-Adenine Nucleobase Adduct and Dna Containing An Abasic Site within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca101 b:17.6 occ:1.00 O B:HOH207 2.2 25.8 1.0 O B:HOH214 2.3 16.7 1.0 O A:HOH559 2.4 25.4 1.0 O B:HOH218 2.4 18.9 1.0 O B:HOH205 2.4 18.5 1.0 O B:HOH237 2.5 28.7 1.0 O A:HOH588 2.6 25.2 1.0 N7 B:DG7 2.7 16.8 1.0 HZ2 A:LYS183 3.3 25.0 1.0 H8 B:DG7 3.4 19.7 1.0 C8 B:DG7 3.4 16.4 1.0 C5 B:DG7 3.8 16.4 1.0 NZ A:LYS183 4.1 20.8 1.0 O6 B:DG7 4.1 18.8 1.0 O2P B:ORP6 4.3 17.9 1.0 HZ3 A:LYS183 4.3 25.0 1.0 HZ1 A:LYS183 4.3 25.0 1.0 C6 B:DG7 4.4 17.0 1.0 O6 B:DG8 4.4 22.6 1.0 OP2 B:DG7 4.4 16.9 1.0 O B:HOH226 4.5 19.9 1.0 O B:HOH222 4.5 19.9 1.0 O C:HOH105 4.5 21.1 1.0 O C:HOH129 4.6 35.1 1.0 O B:HOH202 4.6 23.6 1.0 N9 B:DG7 4.7 15.0 1.0 O B:HOH206 4.8 22.4 1.0 H5'' B:DG7 4.8 27.7 1.0 N62 B:YNG102 4.8 14.0 1.0 H42 C:DC3 4.9 22.8 1.0 C4 B:DG7 4.9 17.9 1.0 H611 B:YNG102 4.9 20.5 1.0 N7 B:DG8 4.9 19.1 1.0 HD2 A:LYS183 5.0 24.6 1.0

E.A.Mullins, J.Dorival, G.L.Tang, D.L.Boger, B.F.Eichman. Structural Evolution of A Dna Repair Self-Resistance Mechanism Targeting Duocarmycin Family Secondary Metabolites To Be Published.