Calcium in PDB 7nef: Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution
Protein crystallography data
The structure of Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution, PDB code: 7nef
was solved by
H.Personne,
S.Baeriswyl,
A.Stocker,
J.-L.Reymond,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
48.59 /
1.51
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.467,
64.3,
118.926,
90,
94.91,
90
|
|
R / Rfree (%)
|
18.2 /
20.6
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Calcium atom in the Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution
(pdb code 7nef). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the
Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution, PDB code: 7nef:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 16 in 7nef
Go back to
Calcium Binding Sites List in 7nef
Calcium binding site 1 out
of 16 in the Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca301
b:14.2
occ:1.00
|
OD1
|
A:ASP99
|
2.3
|
14.8
|
1.0
|
|
OD1
|
A:ASP101
|
2.3
|
14.1
|
1.0
|
|
OD2
|
A:ASP104
|
2.4
|
14.1
|
1.0
|
|
OE2
|
A:GLU95
|
2.4
|
16.4
|
1.0
|
|
OE1
|
A:GLU95
|
2.4
|
14.8
|
1.0
|
|
H4O
|
I:ZDC101
|
2.4
|
17.5
|
1.0
|
|
O3
|
I:ZDC101
|
2.5
|
15.3
|
1.0
|
|
O4
|
I:ZDC101
|
2.5
|
14.6
|
1.0
|
|
OD1
|
A:ASP104
|
2.6
|
13.5
|
1.0
|
|
CD
|
A:GLU95
|
2.8
|
12.1
|
1.0
|
|
CG
|
A:ASP104
|
2.9
|
14.0
|
1.0
|
|
H3O
|
I:ZDC101
|
3.1
|
18.4
|
1.0
|
|
C4
|
I:ZDC101
|
3.3
|
12.5
|
1.0
|
|
H
|
A:ASP101
|
3.3
|
18.4
|
1.0
|
|
CG
|
A:ASP99
|
3.3
|
15.2
|
1.0
|
|
H4
|
I:ZDC101
|
3.3
|
14.9
|
1.0
|
|
C3
|
I:ZDC101
|
3.4
|
12.4
|
1.0
|
|
CG
|
A:ASP101
|
3.4
|
13.7
|
1.0
|
|
OD2
|
A:ASP99
|
3.7
|
14.9
|
1.0
|
|
H3
|
I:ZDC101
|
3.7
|
14.9
|
1.0
|
|
CA
|
A:CA302
|
3.7
|
13.4
|
1.0
|
|
H
|
A:ASP96
|
3.7
|
16.4
|
1.0
|
|
H
|
A:TYR102
|
3.7
|
16.4
|
1.0
|
|
HA
|
A:GLU95
|
3.9
|
17.2
|
1.0
|
|
OD2
|
A:ASP101
|
3.9
|
14.4
|
1.0
|
|
H
|
A:ASN100
|
4.0
|
21.0
|
1.0
|
|
H
|
A:GLY97
|
4.0
|
19.0
|
1.0
|
|
N
|
A:ASP101
|
4.1
|
15.4
|
1.0
|
|
O
|
A:HOH457
|
4.1
|
24.7
|
1.0
|
|
H
|
A:ASP99
|
4.1
|
21.1
|
1.0
|
|
CG
|
A:GLU95
|
4.2
|
12.1
|
1.0
|
|
OD1
|
A:ASP96
|
4.2
|
16.2
|
1.0
|
|
CB
|
A:ASP104
|
4.4
|
13.9
|
1.0
|
|
N
|
A:TYR102
|
4.4
|
13.7
|
1.0
|
|
N
|
A:ASN100
|
4.4
|
17.5
|
1.0
|
|
H
|
A:ASN103
|
4.5
|
16.0
|
1.0
|
|
N
|
A:ASP96
|
4.5
|
13.7
|
1.0
|
|
CB
|
A:ASP101
|
4.6
|
16.3
|
1.0
|
|
N
|
A:GLY97
|
4.6
|
15.8
|
1.0
|
|
HG3
|
A:GLU95
|
4.6
|
14.4
|
1.0
|
|
H
|
A:ASP104
|
4.7
|
15.7
|
1.0
|
|
OD1
|
A:ASN103
|
4.7
|
12.5
|
1.0
|
|
CA
|
A:GLU95
|
4.7
|
14.4
|
1.0
|
|
C2
|
I:ZDC101
|
4.7
|
15.3
|
1.0
|
|
CB
|
A:ASP99
|
4.7
|
17.6
|
1.0
|
|
HA3
|
A:GLY97
|
4.7
|
23.7
|
1.0
|
|
HB2
|
A:ASP104
|
4.7
|
16.7
|
1.0
|
|
CA
|
A:ASP101
|
4.7
|
16.4
|
1.0
|
|
C5
|
I:ZDC101
|
4.7
|
15.6
|
1.0
|
|
H2O
|
I:ZDC101
|
4.7
|
17.7
|
1.0
|
|
HG2
|
A:GLU95
|
4.8
|
14.4
|
1.0
|
|
O2
|
I:ZDC101
|
4.8
|
14.8
|
1.0
|
|
N
|
A:ASP99
|
4.8
|
17.6
|
1.0
|
|
HA
|
A:ASN100
|
4.8
|
19.7
|
1.0
|
|
HB3
|
A:ASP104
|
4.8
|
16.7
|
1.0
|
|
CB
|
A:GLU95
|
4.9
|
12.0
|
1.0
|
|
HB3
|
A:ASP101
|
4.9
|
19.5
|
1.0
|
|
HB2
|
A:GLU95
|
4.9
|
14.3
|
1.0
|
|
CG
|
A:ASP96
|
4.9
|
19.4
|
1.0
|
|
C
|
A:ASP99
|
5.0
|
17.1
|
1.0
|
|
C
|
A:ASP101
|
5.0
|
12.9
|
1.0
|
|
H5
|
I:ZDC101
|
5.0
|
18.6
|
1.0
|
|
Calcium binding site 2 out
of 16 in 7nef
Go back to
Calcium Binding Sites List in 7nef
Calcium binding site 2 out
of 16 in the Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca302
b:13.4
occ:1.00
|
H2O
|
I:ZDC101
|
2.0
|
17.7
|
1.0
|
|
OD1
|
A:ASN103
|
2.3
|
12.5
|
1.0
|
|
O
|
A:ASN21
|
2.4
|
13.3
|
1.0
|
|
OD2
|
A:ASP101
|
2.4
|
14.4
|
1.0
|
|
O
|
B:GLY114
|
2.4
|
13.4
|
1.0
|
|
OD1
|
A:ASP104
|
2.4
|
13.5
|
1.0
|
|
H3O
|
I:ZDC101
|
2.4
|
18.4
|
1.0
|
|
O2
|
I:ZDC101
|
2.5
|
14.8
|
1.0
|
|
O3
|
I:ZDC101
|
2.5
|
15.3
|
1.0
|
|
CG
|
A:ASP101
|
3.0
|
13.7
|
1.0
|
|
OD1
|
A:ASP101
|
3.1
|
14.1
|
1.0
|
|
H4
|
I:ZDC101
|
3.3
|
14.9
|
1.0
|
|
HD21
|
A:ASN103
|
3.4
|
15.4
|
1.0
|
|
C
|
B:GLY114
|
3.4
|
18.8
|
1.0
|
|
CG
|
A:ASN103
|
3.4
|
11.9
|
1.0
|
|
C3
|
I:ZDC101
|
3.4
|
12.4
|
1.0
|
|
C2
|
I:ZDC101
|
3.4
|
15.3
|
1.0
|
|
HA
|
A:ASP104
|
3.5
|
15.2
|
1.0
|
|
C
|
A:ASN21
|
3.6
|
14.7
|
1.0
|
|
OXT
|
B:GLY114
|
3.6
|
15.0
|
1.0
|
|
CG
|
A:ASP104
|
3.6
|
14.0
|
1.0
|
|
HB3
|
A:ASN21
|
3.7
|
16.6
|
1.0
|
|
CA
|
A:CA301
|
3.7
|
14.2
|
1.0
|
|
H2
|
I:ZDC101
|
3.7
|
18.3
|
1.0
|
|
ND2
|
A:ASN103
|
3.7
|
12.9
|
1.0
|
|
HA
|
A:SER22
|
3.8
|
16.0
|
1.0
|
|
C4
|
I:ZDC101
|
3.8
|
12.5
|
1.0
|
|
HB2
|
A:ASN21
|
3.8
|
16.6
|
1.0
|
|
HB2
|
A:SER22
|
3.8
|
14.9
|
1.0
|
|
CB
|
A:ASN21
|
4.1
|
13.9
|
1.0
|
|
H
|
A:ASN103
|
4.2
|
16.0
|
1.0
|
|
CA
|
A:ASP104
|
4.2
|
12.7
|
1.0
|
|
H3
|
I:ZDC101
|
4.3
|
14.9
|
1.0
|
|
N
|
A:ASP104
|
4.3
|
13.1
|
1.0
|
|
CA
|
A:SER22
|
4.4
|
13.4
|
1.0
|
|
N
|
A:SER22
|
4.4
|
12.4
|
1.0
|
|
OD2
|
A:ASP104
|
4.5
|
14.1
|
1.0
|
|
C
|
A:ASN103
|
4.5
|
13.6
|
1.0
|
|
CB
|
A:ASP101
|
4.5
|
16.3
|
1.0
|
|
OD2
|
A:ASP99
|
4.5
|
14.9
|
1.0
|
|
CB
|
A:ASP104
|
4.5
|
13.9
|
1.0
|
|
O4
|
I:ZDC101
|
4.5
|
14.6
|
1.0
|
|
CA
|
A:ASN21
|
4.5
|
12.7
|
1.0
|
|
H4O
|
I:ZDC101
|
4.5
|
17.5
|
1.0
|
|
O
|
B:HOH461
|
4.6
|
22.3
|
1.0
|
|
H
|
A:ASP104
|
4.6
|
15.7
|
1.0
|
|
CB
|
A:SER22
|
4.6
|
12.5
|
1.0
|
|
HD22
|
A:ASN103
|
4.6
|
15.4
|
1.0
|
|
HB2
|
A:ASP101
|
4.6
|
19.5
|
1.0
|
|
CB
|
A:ASN103
|
4.7
|
14.2
|
1.0
|
|
CA
|
B:GLY114
|
4.7
|
15.7
|
1.0
|
|
C1
|
I:ZDC101
|
4.8
|
16.7
|
1.0
|
|
O
|
A:ASN103
|
4.8
|
12.4
|
1.0
|
|
HB3
|
A:ASP104
|
4.8
|
16.7
|
1.0
|
|
HB3
|
A:ASP101
|
4.9
|
19.5
|
1.0
|
|
N
|
A:ASN103
|
4.9
|
13.3
|
1.0
|
|
CA
|
A:ASN103
|
4.9
|
13.0
|
1.0
|
|
OD1
|
A:ASP99
|
5.0
|
14.8
|
1.0
|
|
Calcium binding site 3 out
of 16 in 7nef
Go back to
Calcium Binding Sites List in 7nef
Calcium binding site 3 out
of 16 in the Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca301
b:14.5
occ:1.00
|
OD1
|
B:ASP101
|
2.3
|
15.9
|
1.0
|
|
OD1
|
B:ASP99
|
2.4
|
16.4
|
1.0
|
|
OE2
|
B:GLU95
|
2.4
|
15.4
|
1.0
|
|
OE1
|
B:GLU95
|
2.4
|
13.8
|
1.0
|
|
OD2
|
B:ASP104
|
2.5
|
13.4
|
1.0
|
|
O3
|
J:ZDC101
|
2.5
|
14.5
|
1.0
|
|
H4O
|
J:ZDC101
|
2.5
|
20.4
|
1.0
|
|
O4
|
J:ZDC101
|
2.6
|
17.0
|
1.0
|
|
OD1
|
B:ASP104
|
2.6
|
13.0
|
1.0
|
|
CD
|
B:GLU95
|
2.7
|
14.2
|
1.0
|
|
CG
|
B:ASP104
|
2.9
|
16.7
|
1.0
|
|
H3O
|
J:ZDC101
|
3.1
|
17.3
|
1.0
|
|
H
|
B:ASP101
|
3.3
|
17.2
|
1.0
|
|
C4
|
J:ZDC101
|
3.4
|
19.2
|
1.0
|
|
CG
|
B:ASP99
|
3.4
|
16.1
|
1.0
|
|
CG
|
B:ASP101
|
3.4
|
16.5
|
1.0
|
|
C3
|
J:ZDC101
|
3.4
|
16.2
|
1.0
|
|
H4
|
J:ZDC101
|
3.4
|
23.0
|
1.0
|
|
H
|
B:TYR102
|
3.7
|
18.0
|
1.0
|
|
OD2
|
B:ASP99
|
3.7
|
17.4
|
1.0
|
|
CA
|
B:CA302
|
3.7
|
13.4
|
1.0
|
|
H3
|
J:ZDC101
|
3.8
|
19.5
|
1.0
|
|
H
|
B:ASP96
|
3.8
|
19.3
|
1.0
|
|
HA
|
B:GLU95
|
3.8
|
14.8
|
1.0
|
|
OD2
|
B:ASP101
|
3.9
|
14.8
|
1.0
|
|
O
|
B:HOH470
|
4.0
|
18.9
|
1.0
|
|
N
|
B:ASP101
|
4.1
|
14.3
|
1.0
|
|
H
|
B:ASN100
|
4.1
|
19.3
|
1.0
|
|
H
|
B:GLY97
|
4.1
|
20.6
|
1.0
|
|
H
|
B:ASP99
|
4.2
|
22.4
|
1.0
|
|
CG
|
B:GLU95
|
4.2
|
14.5
|
1.0
|
|
OD1
|
B:ASP96
|
4.3
|
15.8
|
1.0
|
|
N
|
B:TYR102
|
4.4
|
15.0
|
1.0
|
|
CB
|
B:ASP104
|
4.4
|
12.1
|
1.0
|
|
H
|
B:ASN103
|
4.4
|
15.4
|
1.0
|
|
N
|
B:ASN100
|
4.5
|
16.1
|
1.0
|
|
N
|
B:ASP96
|
4.5
|
16.1
|
1.0
|
|
CB
|
B:ASP101
|
4.6
|
17.4
|
1.0
|
|
HG3
|
B:GLU95
|
4.6
|
17.3
|
1.0
|
|
HA3
|
B:GLY97
|
4.6
|
20.6
|
1.0
|
|
H
|
B:ASP104
|
4.6
|
13.4
|
1.0
|
|
N
|
B:GLY97
|
4.6
|
17.2
|
1.0
|
|
CA
|
B:GLU95
|
4.7
|
12.4
|
1.0
|
|
OD1
|
B:ASN103
|
4.7
|
14.1
|
1.0
|
|
CA
|
B:ASP101
|
4.7
|
12.3
|
1.0
|
|
HG2
|
B:GLU95
|
4.7
|
17.3
|
1.0
|
|
C2
|
J:ZDC101
|
4.7
|
18.4
|
1.0
|
|
HA
|
B:ASN100
|
4.7
|
16.3
|
1.0
|
|
CB
|
B:ASP99
|
4.8
|
19.8
|
1.0
|
|
HB2
|
B:ASP104
|
4.8
|
14.5
|
1.0
|
|
N
|
B:ASP99
|
4.8
|
18.7
|
1.0
|
|
C5
|
J:ZDC101
|
4.8
|
24.8
|
1.0
|
|
O2
|
J:ZDC101
|
4.8
|
15.7
|
1.0
|
|
CB
|
B:GLU95
|
4.9
|
13.9
|
1.0
|
|
H2O
|
J:ZDC101
|
4.9
|
18.8
|
1.0
|
|
HB3
|
B:ASP104
|
4.9
|
14.5
|
1.0
|
|
HB3
|
B:ASP101
|
4.9
|
20.9
|
1.0
|
|
HA
|
B:TYR102
|
4.9
|
14.4
|
1.0
|
|
HB2
|
B:GLU95
|
4.9
|
16.7
|
1.0
|
|
C
|
B:ASP101
|
4.9
|
14.8
|
1.0
|
|
C
|
B:ASP99
|
5.0
|
16.1
|
1.0
|
|
Calcium binding site 4 out
of 16 in 7nef
Go back to
Calcium Binding Sites List in 7nef
Calcium binding site 4 out
of 16 in the Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca302
b:13.4
occ:1.00
|
H2O
|
J:ZDC101
|
2.0
|
18.8
|
1.0
|
|
OD1
|
B:ASN103
|
2.3
|
14.1
|
1.0
|
|
OD2
|
B:ASP101
|
2.4
|
14.8
|
1.0
|
|
O
|
B:ASN21
|
2.4
|
11.8
|
1.0
|
|
OD1
|
B:ASP104
|
2.4
|
13.0
|
1.0
|
|
O
|
A:GLY114
|
2.5
|
13.7
|
1.0
|
|
H3O
|
J:ZDC101
|
2.5
|
17.3
|
1.0
|
|
O3
|
J:ZDC101
|
2.5
|
14.5
|
1.0
|
|
O2
|
J:ZDC101
|
2.5
|
15.7
|
1.0
|
|
OD1
|
B:ASP101
|
3.0
|
15.9
|
1.0
|
|
CG
|
B:ASP101
|
3.1
|
16.5
|
1.0
|
|
H4
|
J:ZDC101
|
3.3
|
23.0
|
1.0
|
|
HD21
|
B:ASN103
|
3.3
|
17.1
|
1.0
|
|
CG
|
B:ASN103
|
3.4
|
11.6
|
1.0
|
|
C3
|
J:ZDC101
|
3.4
|
16.2
|
1.0
|
|
C2
|
J:ZDC101
|
3.4
|
18.4
|
1.0
|
|
C
|
A:GLY114
|
3.4
|
15.9
|
1.0
|
|
HA
|
B:ASP104
|
3.5
|
13.8
|
1.0
|
|
C
|
B:ASN21
|
3.6
|
14.0
|
1.0
|
|
HB3
|
B:ASN21
|
3.7
|
13.7
|
1.0
|
|
OXT
|
A:GLY114
|
3.7
|
16.8
|
1.0
|
|
H2
|
J:ZDC101
|
3.7
|
22.1
|
1.0
|
|
CG
|
B:ASP104
|
3.7
|
16.7
|
1.0
|
|
CA
|
B:CA301
|
3.7
|
14.5
|
1.0
|
|
ND2
|
B:ASN103
|
3.7
|
14.3
|
1.0
|
|
C4
|
J:ZDC101
|
3.8
|
19.2
|
1.0
|
|
HA
|
B:SER22
|
3.8
|
19.9
|
1.0
|
|
HB2
|
B:ASN21
|
3.9
|
13.7
|
1.0
|
|
HB2
|
B:SER22
|
3.9
|
14.2
|
1.0
|
|
CB
|
B:ASN21
|
4.1
|
11.5
|
1.0
|
|
H
|
B:ASN103
|
4.2
|
15.4
|
1.0
|
|
CA
|
B:ASP104
|
4.2
|
11.6
|
1.0
|
|
H3
|
J:ZDC101
|
4.2
|
19.5
|
1.0
|
|
N
|
B:ASP104
|
4.3
|
11.2
|
1.0
|
|
CA
|
B:SER22
|
4.4
|
16.6
|
1.0
|
|
H4O
|
J:ZDC101
|
4.5
|
20.4
|
1.0
|
|
N
|
B:SER22
|
4.5
|
12.7
|
1.0
|
|
OD2
|
B:ASP99
|
4.5
|
17.4
|
1.0
|
|
O4
|
J:ZDC101
|
4.5
|
17.0
|
1.0
|
|
C
|
B:ASN103
|
4.5
|
12.3
|
1.0
|
|
O
|
A:HOH445
|
4.5
|
20.9
|
1.0
|
|
H
|
B:ASP104
|
4.5
|
13.4
|
1.0
|
|
OD2
|
B:ASP104
|
4.5
|
13.4
|
1.0
|
|
CB
|
B:ASP101
|
4.5
|
17.4
|
1.0
|
|
CB
|
B:ASP104
|
4.5
|
12.1
|
1.0
|
|
CA
|
B:ASN21
|
4.5
|
12.1
|
1.0
|
|
HD22
|
B:ASN103
|
4.6
|
17.1
|
1.0
|
|
CB
|
B:SER22
|
4.6
|
11.9
|
1.0
|
|
HB2
|
B:ASP101
|
4.7
|
20.9
|
1.0
|
|
CB
|
B:ASN103
|
4.7
|
11.2
|
1.0
|
|
C1
|
J:ZDC101
|
4.7
|
17.5
|
1.0
|
|
CA
|
A:GLY114
|
4.8
|
17.0
|
1.0
|
|
O
|
B:ASN103
|
4.9
|
13.0
|
1.0
|
|
N
|
B:ASN103
|
4.9
|
12.8
|
1.0
|
|
HB3
|
B:ASP104
|
4.9
|
14.5
|
1.0
|
|
HB3
|
B:ASP101
|
4.9
|
20.9
|
1.0
|
|
CA
|
B:ASN103
|
4.9
|
11.3
|
1.0
|
|
OD1
|
B:ASP99
|
5.0
|
16.4
|
1.0
|
|
O5
|
J:ZDC101
|
5.0
|
16.3
|
1.0
|
|
Calcium binding site 5 out
of 16 in 7nef
Go back to
Calcium Binding Sites List in 7nef
Calcium binding site 5 out
of 16 in the Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca301
b:13.1
occ:1.00
|
H2O
|
K:ZDC101
|
2.0
|
16.4
|
1.0
|
|
OD1
|
C:ASN103
|
2.3
|
13.1
|
1.0
|
|
O
|
D:GLY114
|
2.3
|
13.3
|
1.0
|
|
OD2
|
C:ASP101
|
2.4
|
14.8
|
1.0
|
|
OD1
|
C:ASP104
|
2.4
|
13.2
|
1.0
|
|
O
|
C:ASN21
|
2.4
|
14.6
|
1.0
|
|
H3O
|
K:ZDC101
|
2.4
|
17.9
|
1.0
|
|
O2
|
K:ZDC101
|
2.5
|
13.7
|
1.0
|
|
O3
|
K:ZDC101
|
2.5
|
15.0
|
1.0
|
|
OD1
|
C:ASP101
|
3.0
|
14.8
|
1.0
|
|
CG
|
C:ASP101
|
3.0
|
11.8
|
1.0
|
|
H4
|
K:ZDC101
|
3.3
|
17.3
|
1.0
|
|
HD21
|
C:ASN103
|
3.3
|
14.0
|
1.0
|
|
C
|
D:GLY114
|
3.3
|
16.8
|
1.0
|
|
CG
|
C:ASN103
|
3.3
|
11.7
|
1.0
|
|
C3
|
K:ZDC101
|
3.4
|
13.2
|
1.0
|
|
C2
|
K:ZDC101
|
3.4
|
12.2
|
1.0
|
|
HA
|
C:ASP104
|
3.5
|
16.0
|
1.0
|
|
OXT
|
D:GLY114
|
3.5
|
15.0
|
1.0
|
|
C
|
C:ASN21
|
3.6
|
12.2
|
1.0
|
|
HB3
|
C:ASN21
|
3.6
|
15.3
|
1.0
|
|
CG
|
C:ASP104
|
3.6
|
14.6
|
1.0
|
|
ND2
|
C:ASN103
|
3.7
|
11.7
|
1.0
|
|
H2
|
K:ZDC101
|
3.7
|
14.6
|
1.0
|
|
CA
|
C:CA302
|
3.8
|
14.0
|
1.0
|
|
C4
|
K:ZDC101
|
3.8
|
14.4
|
1.0
|
|
HA
|
C:SER22
|
3.8
|
14.6
|
1.0
|
|
HB2
|
C:ASN21
|
3.9
|
15.3
|
1.0
|
|
HB2
|
C:SER22
|
4.0
|
16.6
|
1.0
|
|
CB
|
C:ASN21
|
4.1
|
12.7
|
1.0
|
|
H
|
C:ASN103
|
4.2
|
13.9
|
1.0
|
|
CA
|
C:ASP104
|
4.2
|
13.4
|
1.0
|
|
N
|
C:ASP104
|
4.2
|
12.5
|
1.0
|
|
H3
|
K:ZDC101
|
4.3
|
15.8
|
1.0
|
|
H
|
C:ASP104
|
4.5
|
15.0
|
1.0
|
|
CA
|
C:SER22
|
4.5
|
12.2
|
1.0
|
|
H4O
|
K:ZDC101
|
4.5
|
15.5
|
1.0
|
|
CB
|
C:ASP104
|
4.5
|
12.0
|
1.0
|
|
N
|
C:SER22
|
4.5
|
13.8
|
1.0
|
|
OD2
|
C:ASP104
|
4.5
|
13.0
|
1.0
|
|
CB
|
C:ASP101
|
4.5
|
13.4
|
1.0
|
|
O
|
C:HOH454
|
4.5
|
25.3
|
1.0
|
|
C
|
C:ASN103
|
4.5
|
12.5
|
1.0
|
|
OD2
|
C:ASP99
|
4.5
|
16.8
|
1.0
|
|
CA
|
C:ASN21
|
4.5
|
12.2
|
1.0
|
|
HD22
|
C:ASN103
|
4.5
|
14.0
|
1.0
|
|
O4
|
K:ZDC101
|
4.6
|
12.9
|
1.0
|
|
HB2
|
C:ASP101
|
4.6
|
16.1
|
1.0
|
|
CB
|
C:SER22
|
4.7
|
13.8
|
1.0
|
|
CB
|
C:ASN103
|
4.7
|
12.3
|
1.0
|
|
CA
|
D:GLY114
|
4.7
|
14.5
|
1.0
|
|
C1
|
K:ZDC101
|
4.7
|
13.8
|
1.0
|
|
HB3
|
C:ASP104
|
4.8
|
14.3
|
1.0
|
|
O
|
C:ASN103
|
4.8
|
12.6
|
1.0
|
|
N
|
C:ASN103
|
4.9
|
11.6
|
1.0
|
|
HB3
|
C:ASP101
|
4.9
|
16.1
|
1.0
|
|
CA
|
C:ASN103
|
4.9
|
11.8
|
1.0
|
|
OD1
|
C:ASP99
|
5.0
|
15.9
|
1.0
|
|
O5
|
K:ZDC101
|
5.0
|
15.1
|
1.0
|
|
Calcium binding site 6 out
of 16 in 7nef
Go back to
Calcium Binding Sites List in 7nef
Calcium binding site 6 out
of 16 in the Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca302
b:14.0
occ:1.00
|
H4O
|
K:ZDC101
|
2.3
|
15.5
|
1.0
|
|
OE2
|
C:GLU95
|
2.3
|
13.8
|
1.0
|
|
OD1
|
C:ASP101
|
2.3
|
14.8
|
1.0
|
|
OD1
|
C:ASP99
|
2.4
|
15.9
|
1.0
|
|
OD2
|
C:ASP104
|
2.4
|
13.0
|
1.0
|
|
O3
|
K:ZDC101
|
2.5
|
15.0
|
1.0
|
|
OE1
|
C:GLU95
|
2.5
|
13.7
|
1.0
|
|
O4
|
K:ZDC101
|
2.5
|
12.9
|
1.0
|
|
OD1
|
C:ASP104
|
2.6
|
13.2
|
1.0
|
|
CD
|
C:GLU95
|
2.7
|
12.2
|
1.0
|
|
CG
|
C:ASP104
|
2.9
|
14.6
|
1.0
|
|
H3O
|
K:ZDC101
|
3.2
|
17.9
|
1.0
|
|
C4
|
K:ZDC101
|
3.3
|
14.4
|
1.0
|
|
H4
|
K:ZDC101
|
3.3
|
17.3
|
1.0
|
|
H
|
C:ASP101
|
3.4
|
14.2
|
1.0
|
|
C3
|
K:ZDC101
|
3.4
|
13.2
|
1.0
|
|
CG
|
C:ASP99
|
3.4
|
16.6
|
1.0
|
|
CG
|
C:ASP101
|
3.4
|
11.8
|
1.0
|
|
H
|
C:ASP96
|
3.7
|
16.9
|
1.0
|
|
OD2
|
C:ASP99
|
3.7
|
16.8
|
1.0
|
|
H
|
C:TYR102
|
3.8
|
14.0
|
1.0
|
|
H3
|
K:ZDC101
|
3.8
|
15.8
|
1.0
|
|
CA
|
C:CA301
|
3.8
|
13.1
|
1.0
|
|
HA
|
C:GLU95
|
3.9
|
15.0
|
1.0
|
|
OD2
|
C:ASP101
|
4.0
|
14.8
|
1.0
|
|
H
|
C:ASN100
|
4.0
|
19.0
|
1.0
|
|
O
|
C:HOH466
|
4.0
|
20.6
|
1.0
|
|
H
|
C:GLY97
|
4.0
|
16.9
|
1.0
|
|
H
|
C:ASP99
|
4.1
|
22.0
|
1.0
|
|
OD1
|
C:ASP96
|
4.1
|
12.8
|
1.0
|
|
N
|
C:ASP101
|
4.1
|
11.8
|
1.0
|
|
CG
|
C:GLU95
|
4.2
|
13.2
|
1.0
|
|
CB
|
C:ASP104
|
4.4
|
12.0
|
1.0
|
|
N
|
C:ASN100
|
4.4
|
15.8
|
1.0
|
|
N
|
C:TYR102
|
4.4
|
11.7
|
1.0
|
|
H
|
C:ASN103
|
4.5
|
13.9
|
1.0
|
|
N
|
C:ASP96
|
4.5
|
14.1
|
1.0
|
|
HG3
|
C:GLU95
|
4.6
|
15.8
|
1.0
|
|
N
|
C:GLY97
|
4.6
|
14.1
|
1.0
|
|
H
|
C:ASP104
|
4.6
|
15.0
|
1.0
|
|
CB
|
C:ASP101
|
4.6
|
13.4
|
1.0
|
|
HA3
|
C:GLY97
|
4.7
|
18.6
|
1.0
|
|
CA
|
C:GLU95
|
4.7
|
12.5
|
1.0
|
|
OD1
|
C:ASN103
|
4.7
|
13.1
|
1.0
|
|
HB2
|
C:ASP104
|
4.7
|
14.3
|
1.0
|
|
C2
|
K:ZDC101
|
4.7
|
12.2
|
1.0
|
|
C5
|
K:ZDC101
|
4.7
|
18.0
|
1.0
|
|
HG2
|
C:GLU95
|
4.7
|
15.8
|
1.0
|
|
CB
|
C:ASP99
|
4.8
|
20.9
|
1.0
|
|
HA
|
C:ASN100
|
4.8
|
21.4
|
1.0
|
|
CA
|
C:ASP101
|
4.8
|
12.4
|
1.0
|
|
N
|
C:ASP99
|
4.8
|
18.4
|
1.0
|
|
HB3
|
C:ASP104
|
4.8
|
14.3
|
1.0
|
|
O2
|
K:ZDC101
|
4.8
|
13.7
|
1.0
|
|
H2O
|
K:ZDC101
|
4.9
|
16.4
|
1.0
|
|
CB
|
C:GLU95
|
4.9
|
12.9
|
1.0
|
|
HB3
|
C:ASP101
|
4.9
|
16.1
|
1.0
|
|
CG
|
C:ASP96
|
4.9
|
13.2
|
1.0
|
|
H5
|
K:ZDC101
|
4.9
|
21.5
|
1.0
|
|
C
|
C:ASP99
|
5.0
|
18.6
|
1.0
|
|
HB2
|
C:GLU95
|
5.0
|
15.5
|
1.0
|
|
C
|
C:ASP101
|
5.0
|
11.7
|
1.0
|
|
Calcium binding site 7 out
of 16 in 7nef
Go back to
Calcium Binding Sites List in 7nef
Calcium binding site 7 out
of 16 in the Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca301
b:12.4
occ:1.00
|
H2O
|
L:ZDC101
|
2.1
|
17.8
|
1.0
|
|
OD1
|
D:ASN103
|
2.4
|
11.7
|
1.0
|
|
OD1
|
D:ASP104
|
2.4
|
13.3
|
1.0
|
|
O
|
C:GLY114
|
2.4
|
15.0
|
1.0
|
|
O
|
D:ASN21
|
2.4
|
13.3
|
1.0
|
|
OD2
|
D:ASP101
|
2.4
|
11.6
|
1.0
|
|
O3
|
L:ZDC101
|
2.5
|
14.0
|
1.0
|
|
O2
|
L:ZDC101
|
2.5
|
14.8
|
1.0
|
|
H3O
|
L:ZDC101
|
2.5
|
16.7
|
1.0
|
|
OD1
|
D:ASP101
|
3.1
|
13.2
|
1.0
|
|
CG
|
D:ASP101
|
3.1
|
11.4
|
1.0
|
|
H4
|
L:ZDC101
|
3.3
|
15.2
|
1.0
|
|
HD21
|
D:ASN103
|
3.3
|
14.8
|
1.0
|
|
C3
|
L:ZDC101
|
3.4
|
14.9
|
1.0
|
|
C2
|
L:ZDC101
|
3.4
|
15.6
|
1.0
|
|
CG
|
D:ASN103
|
3.4
|
12.7
|
1.0
|
|
C
|
C:GLY114
|
3.4
|
18.5
|
1.0
|
|
HA
|
D:ASP104
|
3.6
|
12.7
|
1.0
|
|
C
|
D:ASN21
|
3.6
|
12.6
|
1.0
|
|
OXT
|
C:GLY114
|
3.6
|
17.3
|
1.0
|
|
CG
|
D:ASP104
|
3.6
|
15.1
|
1.0
|
|
H2
|
L:ZDC101
|
3.6
|
18.7
|
1.0
|
|
HB3
|
D:ASN21
|
3.6
|
13.0
|
1.0
|
|
CA
|
D:CA302
|
3.7
|
14.1
|
1.0
|
|
ND2
|
D:ASN103
|
3.7
|
12.4
|
1.0
|
|
C4
|
L:ZDC101
|
3.8
|
12.7
|
1.0
|
|
HA
|
D:SER22
|
3.8
|
14.1
|
1.0
|
|
HB2
|
D:SER22
|
3.9
|
13.9
|
1.0
|
|
HB2
|
D:ASN21
|
3.9
|
13.0
|
1.0
|
|
CB
|
D:ASN21
|
4.1
|
10.8
|
1.0
|
|
H
|
D:ASN103
|
4.2
|
13.0
|
1.0
|
|
CA
|
D:ASP104
|
4.2
|
10.6
|
1.0
|
|
H3
|
L:ZDC101
|
4.2
|
17.8
|
1.0
|
|
N
|
D:ASP104
|
4.3
|
10.6
|
1.0
|
|
CA
|
D:SER22
|
4.4
|
11.8
|
1.0
|
|
N
|
D:SER22
|
4.5
|
11.7
|
1.0
|
|
C
|
D:ASN103
|
4.5
|
10.6
|
1.0
|
|
O4
|
L:ZDC101
|
4.5
|
13.9
|
1.0
|
|
H4O
|
L:ZDC101
|
4.5
|
16.6
|
1.0
|
|
OD2
|
D:ASP104
|
4.5
|
12.6
|
1.0
|
|
CB
|
D:ASP104
|
4.5
|
12.2
|
1.0
|
|
CA
|
D:ASN21
|
4.5
|
10.9
|
1.0
|
|
OD2
|
D:ASP99
|
4.5
|
16.1
|
1.0
|
|
O
|
D:HOH436
|
4.5
|
23.1
|
1.0
|
|
CB
|
D:ASP101
|
4.5
|
14.0
|
1.0
|
|
H
|
D:ASP104
|
4.6
|
12.7
|
1.0
|
|
HD22
|
D:ASN103
|
4.6
|
14.8
|
1.0
|
|
CB
|
D:SER22
|
4.6
|
11.6
|
1.0
|
|
HB2
|
D:ASP101
|
4.7
|
16.8
|
1.0
|
|
CB
|
D:ASN103
|
4.7
|
11.8
|
1.0
|
|
C1
|
L:ZDC101
|
4.7
|
14.8
|
1.0
|
|
CA
|
C:GLY114
|
4.7
|
13.5
|
1.0
|
|
O
|
D:ASN103
|
4.8
|
10.7
|
1.0
|
|
HB3
|
D:ASP104
|
4.8
|
14.6
|
1.0
|
|
N
|
D:ASN103
|
4.9
|
10.8
|
1.0
|
|
CA
|
D:ASN103
|
4.9
|
10.6
|
1.0
|
|
O5
|
L:ZDC101
|
4.9
|
15.7
|
1.0
|
|
HB3
|
D:ASP101
|
4.9
|
16.8
|
1.0
|
|
Calcium binding site 8 out
of 16 in 7nef
Go back to
Calcium Binding Sites List in 7nef
Calcium binding site 8 out
of 16 in the Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca302
b:14.1
occ:1.00
|
OD1
|
D:ASP101
|
2.3
|
13.2
|
1.0
|
|
OD1
|
D:ASP99
|
2.4
|
15.2
|
1.0
|
|
H4O
|
L:ZDC101
|
2.4
|
16.6
|
1.0
|
|
OE1
|
D:GLU95
|
2.4
|
13.2
|
1.0
|
|
O3
|
L:ZDC101
|
2.4
|
14.0
|
1.0
|
|
OD2
|
D:ASP104
|
2.5
|
12.6
|
1.0
|
|
OE2
|
D:GLU95
|
2.5
|
13.8
|
1.0
|
|
O4
|
L:ZDC101
|
2.5
|
13.9
|
1.0
|
|
OD1
|
D:ASP104
|
2.6
|
13.3
|
1.0
|
|
CD
|
D:GLU95
|
2.8
|
14.5
|
1.0
|
|
CG
|
D:ASP104
|
2.9
|
15.1
|
1.0
|
|
H3O
|
L:ZDC101
|
3.0
|
16.7
|
1.0
|
|
C4
|
L:ZDC101
|
3.3
|
12.7
|
1.0
|
|
H
|
D:ASP101
|
3.4
|
18.4
|
1.0
|
|
C3
|
L:ZDC101
|
3.4
|
14.9
|
1.0
|
|
CG
|
D:ASP99
|
3.4
|
15.8
|
1.0
|
|
H4
|
L:ZDC101
|
3.4
|
15.2
|
1.0
|
|
CG
|
D:ASP101
|
3.4
|
11.4
|
1.0
|
|
H3
|
L:ZDC101
|
3.7
|
17.8
|
1.0
|
|
OD2
|
D:ASP99
|
3.7
|
16.1
|
1.0
|
|
CA
|
D:CA301
|
3.7
|
12.4
|
1.0
|
|
H
|
D:TYR102
|
3.8
|
14.9
|
1.0
|
|
H
|
D:ASP96
|
3.8
|
20.0
|
1.0
|
|
HA
|
D:GLU95
|
3.9
|
17.7
|
1.0
|
|
OD2
|
D:ASP101
|
4.0
|
11.6
|
1.0
|
|
H
|
D:ASN100
|
4.0
|
20.8
|
1.0
|
|
O
|
D:HOH464
|
4.1
|
20.8
|
1.0
|
|
H
|
D:GLY97
|
4.1
|
17.1
|
1.0
|
|
N
|
D:ASP101
|
4.1
|
15.3
|
1.0
|
|
H
|
D:ASP99
|
4.2
|
21.3
|
1.0
|
|
CG
|
D:GLU95
|
4.3
|
15.1
|
1.0
|
|
OD1
|
D:ASP96
|
4.3
|
15.0
|
1.0
|
|
CB
|
D:ASP104
|
4.4
|
12.2
|
1.0
|
|
N
|
D:TYR102
|
4.4
|
12.4
|
1.0
|
|
N
|
D:ASN100
|
4.4
|
17.3
|
1.0
|
|
H
|
D:ASN103
|
4.5
|
13.0
|
1.0
|
|
N
|
D:ASP96
|
4.5
|
16.7
|
1.0
|
|
CB
|
D:ASP101
|
4.6
|
14.0
|
1.0
|
|
HG3
|
D:GLU95
|
4.6
|
18.1
|
1.0
|
|
N
|
D:GLY97
|
4.7
|
14.3
|
1.0
|
|
C2
|
L:ZDC101
|
4.7
|
15.6
|
1.0
|
|
H
|
D:ASP104
|
4.7
|
12.7
|
1.0
|
|
CA
|
D:GLU95
|
4.7
|
14.8
|
1.0
|
|
OD1
|
D:ASN103
|
4.7
|
11.7
|
1.0
|
|
HB2
|
D:ASP104
|
4.7
|
14.6
|
1.0
|
|
HA3
|
D:GLY97
|
4.7
|
24.2
|
1.0
|
|
CA
|
D:ASP101
|
4.8
|
15.4
|
1.0
|
|
CB
|
D:ASP99
|
4.8
|
15.9
|
1.0
|
|
HG2
|
D:GLU95
|
4.8
|
18.1
|
1.0
|
|
C5
|
L:ZDC101
|
4.8
|
14.0
|
1.0
|
|
HA
|
D:ASN100
|
4.8
|
21.6
|
1.0
|
|
N
|
D:ASP99
|
4.8
|
17.8
|
1.0
|
|
O2
|
L:ZDC101
|
4.8
|
14.8
|
1.0
|
|
HB3
|
D:ASP104
|
4.8
|
14.6
|
1.0
|
|
HB3
|
D:ASP101
|
4.9
|
16.8
|
1.0
|
|
H2O
|
L:ZDC101
|
4.9
|
17.8
|
1.0
|
|
CB
|
D:GLU95
|
4.9
|
12.6
|
1.0
|
|
HB2
|
D:GLU95
|
4.9
|
15.1
|
1.0
|
|
HA
|
D:TYR102
|
4.9
|
15.5
|
1.0
|
|
C
|
D:ASP99
|
4.9
|
14.5
|
1.0
|
|
C
|
D:ASP101
|
5.0
|
11.7
|
1.0
|
|
CG
|
D:ASP96
|
5.0
|
16.9
|
1.0
|
|
Calcium binding site 9 out
of 16 in 7nef
Go back to
Calcium Binding Sites List in 7nef
Calcium binding site 9 out
of 16 in the Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca301
b:11.9
occ:1.00
|
H2O
|
M:ZDC101
|
2.1
|
15.0
|
1.0
|
|
OD1
|
E:ASN103
|
2.3
|
11.5
|
1.0
|
|
OD2
|
E:ASP101
|
2.4
|
11.9
|
1.0
|
|
O
|
E:ASN21
|
2.4
|
11.5
|
1.0
|
|
OD1
|
E:ASP104
|
2.4
|
12.1
|
1.0
|
|
O
|
F:GLY114
|
2.5
|
12.7
|
1.0
|
|
O2
|
M:ZDC101
|
2.5
|
12.5
|
1.0
|
|
O3
|
M:ZDC101
|
2.5
|
14.5
|
1.0
|
|
H3O
|
M:ZDC101
|
2.6
|
17.4
|
1.0
|
|
OD1
|
E:ASP101
|
3.0
|
12.5
|
1.0
|
|
CG
|
E:ASP101
|
3.0
|
15.6
|
1.0
|
|
HD21
|
E:ASN103
|
3.3
|
12.9
|
1.0
|
|
CG
|
E:ASN103
|
3.3
|
10.7
|
1.0
|
|
H4
|
M:ZDC101
|
3.4
|
14.6
|
1.0
|
|
C3
|
M:ZDC101
|
3.4
|
12.0
|
1.0
|
|
C2
|
M:ZDC101
|
3.4
|
13.2
|
1.0
|
|
C
|
F:GLY114
|
3.5
|
13.2
|
1.0
|
|
HA
|
E:ASP104
|
3.5
|
12.9
|
1.0
|
|
C
|
E:ASN21
|
3.6
|
12.2
|
1.0
|
|
CG
|
E:ASP104
|
3.6
|
10.9
|
1.0
|
|
HB3
|
E:ASN21
|
3.6
|
13.0
|
1.0
|
|
OXT
|
F:GLY114
|
3.7
|
14.1
|
1.0
|
|
ND2
|
E:ASN103
|
3.7
|
10.8
|
1.0
|
|
H2
|
M:ZDC101
|
3.7
|
15.8
|
1.0
|
|
CA
|
E:CA302
|
3.7
|
12.3
|
1.0
|
|
HB2
|
E:SER22
|
3.8
|
15.6
|
1.0
|
|
HB2
|
E:ASN21
|
3.8
|
13.0
|
1.0
|
|
HA
|
E:SER22
|
3.8
|
14.6
|
1.0
|
|
C4
|
M:ZDC101
|
3.8
|
12.1
|
1.0
|
|
CB
|
E:ASN21
|
4.1
|
10.9
|
1.0
|
|
H
|
E:ASN103
|
4.2
|
12.8
|
1.0
|
|
CA
|
E:ASP104
|
4.2
|
10.8
|
1.0
|
|
N
|
E:ASP104
|
4.2
|
11.7
|
1.0
|
|
H3
|
M:ZDC101
|
4.3
|
14.3
|
1.0
|
|
CA
|
E:SER22
|
4.4
|
12.2
|
1.0
|
|
C
|
E:ASN103
|
4.5
|
10.7
|
1.0
|
|
N
|
E:SER22
|
4.5
|
13.0
|
1.0
|
|
OD2
|
E:ASP104
|
4.5
|
12.8
|
1.0
|
|
H
|
E:ASP104
|
4.5
|
14.0
|
1.0
|
|
CB
|
E:ASP104
|
4.5
|
12.7
|
1.0
|
|
CB
|
E:ASP101
|
4.5
|
14.0
|
1.0
|
|
CA
|
E:ASN21
|
4.5
|
10.9
|
1.0
|
|
O
|
E:HOH453
|
4.5
|
18.3
|
1.0
|
|
O4
|
M:ZDC101
|
4.5
|
13.9
|
1.0
|
|
OD2
|
E:ASP99
|
4.6
|
14.4
|
1.0
|
|
HD22
|
E:ASN103
|
4.6
|
12.9
|
1.0
|
|
CB
|
E:SER22
|
4.6
|
13.1
|
1.0
|
|
H4O
|
M:ZDC101
|
4.6
|
16.6
|
1.0
|
|
HB2
|
E:ASP101
|
4.6
|
16.8
|
1.0
|
|
CB
|
E:ASN103
|
4.7
|
11.7
|
1.0
|
|
C1
|
M:ZDC101
|
4.8
|
12.6
|
1.0
|
|
O
|
E:ASN103
|
4.8
|
11.3
|
1.0
|
|
CA
|
F:GLY114
|
4.8
|
11.8
|
1.0
|
|
HB3
|
E:ASP104
|
4.8
|
15.2
|
1.0
|
|
N
|
E:ASN103
|
4.9
|
10.7
|
1.0
|
|
HB3
|
E:ASP101
|
4.9
|
16.8
|
1.0
|
|
CA
|
E:ASN103
|
4.9
|
10.6
|
1.0
|
|
Calcium binding site 10 out
of 16 in 7nef
Go back to
Calcium Binding Sites List in 7nef
Calcium binding site 10 out
of 16 in the Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Fucosylated Linear Peptide FLN65 Bound to the Fucose Binding Lectin Lecb Pa-Iil From Pseudomonas Aeruginosa at 1.5 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca302
b:12.3
occ:1.00
|
OD1
|
E:ASP101
|
2.3
|
12.5
|
1.0
|
|
OD1
|
E:ASP99
|
2.3
|
13.4
|
1.0
|
|
OD2
|
E:ASP104
|
2.4
|
12.8
|
1.0
|
|
OE2
|
E:GLU95
|
2.4
|
13.9
|
1.0
|
|
O3
|
M:ZDC101
|
2.4
|
14.5
|
1.0
|
|
OE1
|
E:GLU95
|
2.5
|
12.7
|
1.0
|
|
O4
|
M:ZDC101
|
2.6
|
13.9
|
1.0
|
|
H4O
|
M:ZDC101
|
2.6
|
16.6
|
1.0
|
|
OD1
|
E:ASP104
|
2.6
|
12.1
|
1.0
|
|
CD
|
E:GLU95
|
2.8
|
11.9
|
1.0
|
|
CG
|
E:ASP104
|
2.9
|
10.9
|
1.0
|
|
H3O
|
M:ZDC101
|
3.0
|
17.4
|
1.0
|
|
C4
|
M:ZDC101
|
3.3
|
12.1
|
1.0
|
|
H
|
E:ASP101
|
3.3
|
13.2
|
1.0
|
|
CG
|
E:ASP99
|
3.4
|
13.5
|
1.0
|
|
C3
|
M:ZDC101
|
3.4
|
12.0
|
1.0
|
|
CG
|
E:ASP101
|
3.4
|
15.6
|
1.0
|
|
H4
|
M:ZDC101
|
3.4
|
14.6
|
1.0
|
|
H3
|
M:ZDC101
|
3.7
|
14.3
|
1.0
|
|
OD2
|
E:ASP99
|
3.7
|
14.4
|
1.0
|
|
CA
|
E:CA301
|
3.7
|
11.9
|
1.0
|
|
H
|
E:ASP96
|
3.7
|
15.7
|
1.0
|
|
H
|
E:TYR102
|
3.7
|
15.3
|
1.0
|
|
HA
|
E:GLU95
|
3.9
|
13.8
|
1.0
|
|
OD2
|
E:ASP101
|
3.9
|
11.9
|
1.0
|
|
O
|
M:HOH206
|
4.0
|
20.0
|
1.0
|
|
H
|
E:ASN100
|
4.0
|
15.2
|
1.0
|
|
H
|
E:GLY97
|
4.1
|
15.6
|
1.0
|
|
N
|
E:ASP101
|
4.1
|
11.0
|
1.0
|
|
OD1
|
E:ASP96
|
4.1
|
12.6
|
1.0
|
|
H
|
E:ASP99
|
4.2
|
17.3
|
1.0
|
|
CG
|
E:GLU95
|
4.3
|
12.8
|
1.0
|
|
CB
|
E:ASP104
|
4.4
|
12.7
|
1.0
|
|
N
|
E:TYR102
|
4.4
|
12.7
|
1.0
|
|
N
|
E:ASN100
|
4.4
|
12.7
|
1.0
|
|
H
|
E:ASN103
|
4.5
|
12.8
|
1.0
|
|
N
|
E:ASP96
|
4.5
|
13.1
|
1.0
|
|
CB
|
E:ASP101
|
4.6
|
14.0
|
1.0
|
|
H
|
E:ASP104
|
4.6
|
14.0
|
1.0
|
|
HG3
|
E:GLU95
|
4.6
|
15.3
|
1.0
|
|
N
|
E:GLY97
|
4.6
|
13.0
|
1.0
|
|
OD1
|
E:ASN103
|
4.7
|
11.5
|
1.0
|
|
C2
|
M:ZDC101
|
4.7
|
13.2
|
1.0
|
|
HA3
|
E:GLY97
|
4.7
|
18.6
|
1.0
|
|
CB
|
E:ASP99
|
4.7
|
15.2
|
1.0
|
|
CA
|
E:GLU95
|
4.7
|
11.5
|
1.0
|
|
CA
|
E:ASP101
|
4.7
|
13.9
|
1.0
|
|
HB2
|
E:ASP104
|
4.7
|
15.2
|
1.0
|
|
HG2
|
E:GLU95
|
4.8
|
15.3
|
1.0
|
|
C5
|
M:ZDC101
|
4.8
|
11.9
|
1.0
|
|
O2
|
M:ZDC101
|
4.8
|
12.5
|
1.0
|
|
N
|
E:ASP99
|
4.8
|
14.4
|
1.0
|
|
HA
|
E:ASN100
|
4.8
|
14.2
|
1.0
|
|
HB3
|
E:ASP104
|
4.8
|
15.2
|
1.0
|
|
H2O
|
M:ZDC101
|
4.9
|
15.0
|
1.0
|
|
HB3
|
E:ASP101
|
4.9
|
16.8
|
1.0
|
|
CG
|
E:ASP96
|
4.9
|
12.4
|
1.0
|
|
CB
|
E:GLU95
|
4.9
|
10.8
|
1.0
|
|
HB2
|
E:GLU95
|
4.9
|
13.0
|
1.0
|
|
C
|
E:ASP99
|
5.0
|
14.1
|
1.0
|
|
C
|
E:ASP101
|
5.0
|
12.3
|
1.0
|
|
Reference:
H.Personne,
S.Baeriswyl,
I.Di Bonaventura,
T.Kohler,
C.Van Delden,
A.Stocker,
S.Javor,
J.-L.Reymond.
Mixed Chirality Alpha-Helix in A Stapled Bicyclic and A Linear Antimicrobial Peptide Revealed By X-Ray Crystallography Chemrxiv 2021.
DOI: 10.26434/CHEMRXIV.14052293.V1
Page generated: Fri Jul 19 02:12:33 2024
|
