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Calcium in PDB 7oa5: Ruva Complexed to A Holliday Junction.

Enzymatic activity of Ruva Complexed to A Holliday Junction.

All present enzymatic activity of Ruva Complexed to A Holliday Junction.:
3.6.4.12;

Protein crystallography data

The structure of Ruva Complexed to A Holliday Junction., PDB code: 7oa5 was solved by S.M.Roe, L.H.Pearl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.06 / 2.38
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 141.35, 141.35, 106.47, 90, 90, 120
R / Rfree (%) 22.7 / 25

Calcium Binding Sites:

The binding sites of Calcium atom in the Ruva Complexed to A Holliday Junction. (pdb code 7oa5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Ruva Complexed to A Holliday Junction., PDB code: 7oa5:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 7oa5

Go back to Calcium Binding Sites List in 7oa5
Calcium binding site 1 out of 2 in the Ruva Complexed to A Holliday Junction.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Ruva Complexed to A Holliday Junction. within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Ca101

b:72.8
occ:1.00
OP2 K:DG8 3.4 90.5 1.0
CD G:PRO82 3.8 36.6 1.0
NE G:ARG53 4.0 46.6 1.0
C2' K:DC7 4.2 86.4 1.0
C3' K:DC7 4.4 87.1 1.0
N7 K:DG8 4.4 96.2 1.0
NH2 G:ARG53 4.4 48.0 1.0
CA G:GLY81 4.5 36.4 1.0
C6 K:DC7 4.6 83.8 1.0
CG G:PRO82 4.7 38.0 1.0
C8 K:DG8 4.7 96.6 1.0
CZ G:ARG53 4.7 48.3 1.0
P K:DG8 4.8 90.6 1.0
CD G:ARG53 4.9 42.7 1.0
O5' K:DC7 5.0 86.0 1.0
N G:PRO82 5.0 37.5 1.0

Calcium binding site 2 out of 2 in 7oa5

Go back to Calcium Binding Sites List in 7oa5
Calcium binding site 2 out of 2 in the Ruva Complexed to A Holliday Junction.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Ruva Complexed to A Holliday Junction. within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Ca101

b:75.9
occ:1.00
O4' L:DG10 3.6 97.0 1.0
CD A:PRO82 3.8 36.5 1.0
NE A:ARG53 4.0 46.5 1.0
C4' L:DG10 4.2 97.3 1.0
OP1 L:DG10 4.3 100.1 1.0
O A:HOH455 4.4 44.2 1.0
NH2 A:ARG53 4.4 46.9 1.0
O2 L:DC9 4.4 99.8 1.0
CA A:GLY81 4.6 36.8 1.0
C1' L:DG10 4.6 96.2 1.0
CZ A:ARG53 4.7 47.4 1.0
CG A:PRO82 4.7 37.6 1.0
O5' L:DG10 4.7 98.9 1.0
O3' L:DG10 4.9 96.7 1.0
CD A:ARG53 4.9 43.4 1.0
O3' L:DC9 4.9 101.4 1.0

Reference:

S.M.Roe, L.H.Pearl. Crystal Structure of An Octameric Ruva-Holliday Junction Complex Molecular Cell V. 2 361 1998.
Page generated: Fri Jul 19 02:28:26 2024

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