Atomistry » Calcium » PDB 7o22-7osk » 7ob5
Atomistry »
  Calcium »
    PDB 7o22-7osk »
      7ob5 »

Calcium in PDB 7ob5: Crystal Structure of 14-3-3 Sigma in Complex with LDB1 Phosphopeptide

Protein crystallography data

The structure of Crystal Structure of 14-3-3 Sigma in Complex with LDB1 Phosphopeptide, PDB code: 7ob5 was solved by F.Centorrino, B.Andlovic, C.Ottmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.30 / 1.80
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 82.59, 112.188, 62.573, 90, 90, 90
R / Rfree (%) 13.8 / 17.1

Other elements in 7ob5:

The structure of Crystal Structure of 14-3-3 Sigma in Complex with LDB1 Phosphopeptide also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of 14-3-3 Sigma in Complex with LDB1 Phosphopeptide (pdb code 7ob5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of 14-3-3 Sigma in Complex with LDB1 Phosphopeptide, PDB code: 7ob5:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 7ob5

Go back to Calcium Binding Sites List in 7ob5
Calcium binding site 1 out of 2 in the Crystal Structure of 14-3-3 Sigma in Complex with LDB1 Phosphopeptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of 14-3-3 Sigma in Complex with LDB1 Phosphopeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:14.7
occ:0.50
OE1 A:GLU2 2.5 11.9 1.0
O A:HOH463 2.6 11.2 1.0
O A:HOH687 2.6 31.6 1.0
O A:HOH699 2.7 37.6 1.0
CD A:GLU2 3.5 12.0 1.0
OE2 A:GLU2 3.8 10.7 1.0
HA A:GLU2 4.0 8.9 1.0
H A:ARG3 4.1 9.6 1.0
O A:HOH603 4.4 10.6 1.0
O A:HOH767 4.5 10.9 1.0
HB3 A:GLU2 4.6 8.7 1.0
CG A:GLU2 4.7 8.2 1.0
CA A:GLU2 4.8 7.4 1.0
CB A:GLU2 4.9 7.2 1.0
N A:ARG3 4.9 8.0 1.0
HG2 A:GLU2 4.9 9.8 1.0
O A:HOH508 5.0 19.6 1.0

Calcium binding site 2 out of 2 in 7ob5

Go back to Calcium Binding Sites List in 7ob5
Calcium binding site 2 out of 2 in the Crystal Structure of 14-3-3 Sigma in Complex with LDB1 Phosphopeptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of 14-3-3 Sigma in Complex with LDB1 Phosphopeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:14.7
occ:1.00
O A:GLU110 2.3 6.0 0.5
O A:HOH547 2.4 18.3 1.0
O A:GLU110 2.4 7.9 0.5
O A:HOH674 2.4 15.0 1.0
OE2 A:GLU35 2.5 14.6 1.0
OE1 A:GLU35 2.6 18.0 1.0
CD A:GLU35 2.9 19.1 1.0
H A:GLY112 3.4 15.7 1.0
C A:GLU110 3.5 9.4 0.5
C A:GLU110 3.6 9.6 0.5
HB3 A:GLU110 3.6 12.1 0.5
HA A:ALA111 3.9 9.7 1.0
HB3 A:GLU110 4.0 13.3 0.5
N A:GLY112 4.0 13.1 1.0
O A:HOH688 4.2 32.6 1.0
HA A:GLU110 4.3 9.4 0.5
HA A:GLU110 4.3 10.4 0.5
HA3 A:GLY112 4.3 20.8 1.0
CG A:GLU35 4.3 11.2 1.0
CA A:GLU110 4.4 8.7 0.5
CB A:GLU110 4.4 10.1 0.5
CA A:GLU110 4.4 7.9 0.5
N A:ALA111 4.5 7.3 1.0
O A:HOH549 4.5 17.4 1.0
HG2 A:GLU35 4.5 13.5 1.0
CA A:ALA111 4.5 8.0 1.0
OE1 A:GLU110 4.6 13.1 0.5
O A:HOH480 4.6 27.2 1.0
C A:ALA111 4.7 11.3 1.0
CB A:GLU110 4.7 11.1 0.5
O1 A:GOL305 4.7 33.3 1.0
HG3 A:GLU35 4.7 13.5 1.0
O A:HOH570 4.8 17.3 1.0
CA A:GLY112 4.8 17.4 1.0
HB2 A:GLU110 4.9 12.1 0.5

Reference:

B.Andlovic, G.Heilmann, S.Ninck, S.Andrei, F.Centorrino, Y.Higuchi, N.Kato, L.Brunsveld, S.Menninger, A.Choidas, A.Wolf, M.Kaiser, J.Eickhoff, C.Ottmann. Inf Alpha Primes Ovarian Cancer Cells For Fusicoccin-Induced Cell Death Via Stabilization of 14-3-3 Protein-Protein Interactions To Be Published.
Page generated: Tue Apr 4 18:21:28 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy