Calcium in PDB 7ofq: The Archaellum of Methanocaldococcus Villosus

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 45;

Binding sites:

The binding sites of Calcium atom in the The Archaellum of Methanocaldococcus Villosus (pdb code 7ofq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 45 binding sites of Calcium where determined in the The Archaellum of Methanocaldococcus Villosus, PDB code: 7ofq:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 45 in the The Archaellum of Methanocaldococcus Villosus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Archaellum of Methanocaldococcus Villosus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:75.3 occ:1.00 OD1 A:ASN166 2.3 61.8 1.0 OD2 A:ASP156 2.3 82.5 1.0 OD1 A:ASP154 2.3 105.8 1.0 OG A:SER158 2.3 67.5 1.0 OD1 A:ASP156 2.3 95.8 1.0 OD2 A:ASP169 2.4 93.1 1.0 OD1 A:ASP169 2.4 75.1 1.0 CG A:ASP156 2.6 89.1 1.0 CG A:ASP169 2.7 80.4 1.0 CG A:ASN166 3.1 89.0 1.0 CG A:ASP154 3.4 112.0 1.0 ND2 A:ASN166 3.4 99.1 1.0 CB A:SER158 3.5 74.1 1.0 N A:SER158 3.9 45.8 1.0 OD2 A:ASP154 4.1 119.6 1.0 CB A:ASP156 4.1 82.7 1.0 CA A:SER158 4.2 51.6 1.0 CB A:ASP154 4.2 89.1 1.0 CB A:ASP169 4.2 75.7 1.0 N A:ASN166 4.3 58.6 1.0 N A:ASP156 4.4 64.3 1.0 CB A:ASN166 4.5 68.4 1.0 CA A:ASP154 4.5 61.4 1.0 N A:LEU159 4.5 63.4 1.0 O A:VAL164 4.6 57.6 1.0 CA A:ASP156 4.7 58.5 1.0 CA A:ASN166 4.7 46.3 1.0 O A:ASN166 4.7 81.3 1.0 N A:ASP155 4.7 70.5 1.0 C A:ASN166 4.7 49.1 1.0 N A:LYS157 4.8 56.9 1.0 C A:ASP156 4.8 54.8 1.0 C A:ASP154 4.8 57.2 1.0 C A:SER158 4.9 56.9 1.0

Calcium binding site 2 out of 45 in the The Archaellum of Methanocaldococcus Villosus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Archaellum of Methanocaldococcus Villosus within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca301 b:71.3 occ:1.00 OD1 B:ASN170 2.2 71.0 1.0 OD1 B:ASP159 2.3 83.3 1.0 OG B:SER161 2.3 74.6 1.0 OD1 B:ASP157 2.3 94.7 1.0 OD2 B:ASP173 2.3 94.5 1.0 OD1 B:ASP173 2.4 86.0 1.0 CG B:ASP173 2.7 93.0 1.0 CG B:ASP157 3.1 96.0 1.0 CG B:ASN170 3.2 94.8 1.0 CB B:SER161 3.3 82.1 1.0 CG B:ASP159 3.5 107.7 1.0 OD2 B:ASP157 3.6 120.9 1.0 ND2 B:ASN170 3.7 114.5 1.0 OD2 B:ASP159 4.1 127.1 1.0 N B:ASN170 4.2 64.2 1.0 N B:SER161 4.2 58.0 1.0 CB B:ASP173 4.2 75.3 1.0 CB B:ASP157 4.2 88.0 1.0 N B:ASP159 4.2 55.5 1.0 CA B:SER161 4.3 57.9 1.0 N B:ALA158 4.4 81.2 1.0 CA B:ASP157 4.4 67.1 1.0 O B:ASN170 4.5 95.6 1.0 CB B:ASN170 4.5 72.5 1.0 CB B:ASP159 4.6 82.1 1.0 CA B:ASN170 4.6 55.0 1.0 C B:ASP157 4.7 67.3 1.0 C B:ASN170 4.7 61.5 1.0 CA B:ASP159 4.7 57.7 1.0 C B:ASP159 4.8 63.2 1.0 N B:THR160 4.9 63.4 1.0

Calcium binding site 3 out of 45 in the The Archaellum of Methanocaldococcus Villosus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Archaellum of Methanocaldococcus Villosus within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca301 b:68.5 occ:1.00 OD1 C:ASN166 2.3 58.3 1.0 OD2 C:ASP156 2.3 77.0 1.0 OD1 C:ASP154 2.3 98.8 1.0 OD1 C:ASP156 2.3 87.7 1.0 OG C:SER158 2.3 58.5 1.0 OD2 C:ASP169 2.4 85.8 1.0 OD1 C:ASP169 2.4 69.8 1.0 CG C:ASP156 2.6 82.9 1.0 CG C:ASP169 2.7 71.4 1.0 CG C:ASN166 3.1 79.6 1.0 CG C:ASP154 3.4 109.7 1.0 ND2 C:ASN166 3.4 95.9 1.0 CB C:SER158 3.5 64.4 1.0 N C:SER158 3.9 47.6 1.0 CB C:ASP156 4.1 75.5 1.0 OD2 C:ASP154 4.1 122.3 1.0 CA C:SER158 4.2 44.5 1.0 CB C:ASP169 4.2 66.4 1.0 CB C:ASP154 4.2 91.2 1.0 N C:ASN166 4.3 59.7 1.0 N C:ASP156 4.4 59.1 1.0 CB C:ASN166 4.5 55.5 1.0 CA C:ASP154 4.5 63.7 1.0 N C:LEU159 4.6 57.7 1.0 O C:VAL164 4.6 53.1 1.0 CA C:ASP156 4.7 52.9 1.0 CA C:ASN166 4.7 44.0 1.0 O C:ASN166 4.7 80.1 1.0 N C:ASP155 4.7 71.6 1.0 C C:ASN166 4.7 48.9 1.0 N C:LYS157 4.8 55.1 1.0 C C:ASP156 4.8 51.7 1.0 C C:ASP154 4.8 60.0 1.0 C C:SER158 4.9 50.2 1.0

Calcium binding site 4 out of 45 in the The Archaellum of Methanocaldococcus Villosus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of The Archaellum of Methanocaldococcus Villosus within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca301 b:59.0 occ:1.00 OD1 D:ASN170 2.2 59.2 1.0 OD1 D:ASP159 2.3 79.0 1.0 OG D:SER161 2.3 68.7 1.0 OD2 D:ASP173 2.3 85.4 1.0 OD1 D:ASP157 2.3 83.1 1.0 OD1 D:ASP173 2.4 75.3 1.0 CG D:ASP173 2.7 85.9 1.0 CG D:ASP157 3.2 93.0 1.0 CG D:ASN170 3.2 84.4 1.0 CB D:SER161 3.3 74.1 1.0 CG D:ASP159 3.4 101.1 1.0 OD2 D:ASP157 3.6 120.0 1.0 ND2 D:ASN170 3.6 102.5 1.0 OD2 D:ASP159 4.1 120.2 1.0 N D:ASN170 4.1 53.5 1.0 N D:SER161 4.2 53.0 1.0 CB D:ASP173 4.2 70.6 1.0 N D:ASP159 4.3 53.0 1.0 CB D:ASP157 4.3 83.1 1.0 CA D:SER161 4.3 49.7 1.0 N D:ALA158 4.4 78.2 1.0 CB D:ASN170 4.4 60.0 1.0 O D:ASN170 4.4 89.5 1.0 CA D:ASP157 4.5 60.6 1.0 CB D:ASP159 4.6 71.0 1.0 CA D:ASN170 4.6 44.8 1.0 C D:ASN170 4.7 53.8 1.0 CA D:ASP159 4.7 55.6 1.0 C D:ASP157 4.7 62.6 1.0 C D:ASP159 4.8 62.1 1.0 N D:THR160 4.9 59.1 1.0

Calcium binding site 5 out of 45 in the The Archaellum of Methanocaldococcus Villosus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of The Archaellum of Methanocaldococcus Villosus within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca301 b:69.5 occ:1.00 OD1 E:ASN166 2.3 58.7 1.0 OD2 E:ASP156 2.3 78.1 1.0 OD1 E:ASP156 2.3 90.5 1.0 OD1 E:ASP154 2.3 100.4 1.0 OG E:SER158 2.3 59.4 1.0 OD1 E:ASP169 2.4 76.8 1.0 OD2 E:ASP169 2.4 87.8 1.0 CG E:ASP156 2.6 84.9 1.0 CG E:ASP169 2.7 78.0 1.0 CG E:ASN166 3.1 85.3 1.0 CG E:ASP154 3.4 107.8 1.0 ND2 E:ASN166 3.4 97.2 1.0 CB E:SER158 3.5 60.5 1.0 N E:SER158 3.9 40.8 1.0 CB E:ASP156 4.1 72.8 1.0 OD2 E:ASP154 4.1 120.1 1.0 CA E:SER158 4.2 40.9 1.0 CB E:ASP169 4.2 67.6 1.0 CB E:ASP154 4.2 88.0 1.0 N E:ASN166 4.3 57.0 1.0 N E:ASP156 4.4 59.8 1.0 CB E:ASN166 4.4 64.9 1.0 CA E:ASP154 4.5 60.2 1.0 N E:LEU159 4.6 52.3 1.0 O E:VAL164 4.6 50.6 1.0 CA E:ASP156 4.6 52.9 1.0 CA E:ASN166 4.7 46.6 1.0 O E:ASN166 4.7 78.6 1.0 N E:ASP155 4.7 69.1 1.0 C E:ASN166 4.7 47.9 1.0 N E:LYS157 4.8 52.0 1.0 C E:ASP156 4.8 54.1 1.0 C E:ASP154 4.8 56.6 1.0 C E:SER158 4.9 45.1 1.0

Calcium binding site 6 out of 45 in the The Archaellum of Methanocaldococcus Villosus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of The Archaellum of Methanocaldococcus Villosus within 5.0Å range: probe atom residue distance (Å) B Occ F:Ca301 b:60.8 occ:1.00 OD1 F:ASN170 2.2 56.4 1.0 OD1 F:ASP159 2.3 68.4 1.0 OD2 F:ASP173 2.3 83.9 1.0 OG F:SER161 2.3 74.1 1.0 OD1 F:ASP157 2.4 88.3 1.0 OD1 F:ASP173 2.4 70.4 1.0 CG F:ASP173 2.7 83.0 1.0 CG F:ASP157 3.2 94.4 1.0 CG F:ASN170 3.2 81.0 1.0 CB F:SER161 3.3 71.8 1.0 CG F:ASP159 3.4 92.7 1.0 OD2 F:ASP157 3.6 122.0 1.0 ND2 F:ASN170 3.6 101.9 1.0 OD2 F:ASP159 4.1 119.3 1.0 N F:ASN170 4.1 50.5 1.0 N F:SER161 4.2 53.7 1.0 CB F:ASP173 4.2 65.9 1.0 N F:ASP159 4.3 50.0 1.0 CB F:ASP157 4.3 91.2 1.0 CA F:SER161 4.3 48.6 1.0 N F:ALA158 4.4 77.7 1.0 O F:ASN170 4.4 89.2 1.0 CB F:ASN170 4.4 55.8 1.0 CA F:ASP157 4.5 68.7 1.0 CB F:ASP159 4.6 68.4 1.0 CA F:ASN170 4.6 42.1 1.0 C F:ASN170 4.7 55.3 1.0 C F:ASP157 4.7 66.9 1.0 CA F:ASP159 4.7 53.0 1.0 C F:ASP159 4.8 65.1 1.0 N F:THR160 5.0 61.2 1.0

Calcium binding site 7 out of 45 in the The Archaellum of Methanocaldococcus Villosus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of The Archaellum of Methanocaldococcus Villosus within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca301 b:62.2 occ:1.00 OD1 G:ASN166 2.3 58.0 1.0 OD2 G:ASP156 2.3 71.9 1.0 OD1 G:ASP156 2.3 85.5 1.0 OD1 G:ASP154 2.3 95.0 1.0 OG G:SER158 2.3 51.9 1.0 OD1 G:ASP169 2.4 69.2 1.0 OD2 G:ASP169 2.4 83.2 1.0 CG G:ASP156 2.6 81.9 1.0 CG G:ASP169 2.7 72.2 1.0 CG G:ASN166 3.1 83.0 1.0 CG G:ASP154 3.4 103.6 1.0 ND2 G:ASN166 3.4 100.5 1.0 CB G:SER158 3.5 58.7 1.0 N G:SER158 3.9 40.5 1.0 CB G:ASP156 4.1 65.8 1.0 OD2 G:ASP154 4.1 114.5 1.0 CA G:SER158 4.2 40.4 1.0 CB G:ASP169 4.2 64.4 1.0 CB G:ASP154 4.2 82.6 1.0 N G:ASN166 4.3 58.1 1.0 N G:ASP156 4.4 57.2 1.0 CB G:ASN166 4.5 61.0 1.0 CA G:ASP154 4.5 59.2 1.0 N G:LEU159 4.6 52.3 1.0 O G:VAL164 4.6 51.8 1.0 CA G:ASP156 4.6 50.0 1.0 CA G:ASN166 4.7 47.3 1.0 O G:ASN166 4.7 82.8 1.0 N G:ASP155 4.7 73.6 1.0 C G:ASN166 4.7 51.3 1.0 N G:LYS157 4.8 51.4 1.0 C G:ASP156 4.8 52.3 1.0 C G:ASP154 4.8 62.1 1.0 C G:SER158 4.9 45.0 1.0

Calcium binding site 8 out of 45 in the The Archaellum of Methanocaldococcus Villosus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of The Archaellum of Methanocaldococcus Villosus within 5.0Å range: probe atom residue distance (Å) B Occ H:Ca301 b:69.3 occ:1.00 OD1 H:ASN170 2.2 60.4 1.0 OD1 H:ASP159 2.3 78.2 1.0 OD2 H:ASP173 2.3 89.3 1.0 OG H:SER161 2.3 78.8 1.0 OD1 H:ASP157 2.3 87.1 1.0 OD1 H:ASP173 2.3 79.9 1.0 CG H:ASP173 2.7 90.5 1.0 CG H:ASP157 3.1 89.3 1.0 CG H:ASN170 3.2 80.6 1.0 CB H:SER161 3.3 73.0 1.0 CG H:ASP159 3.5 100.8 1.0 OD2 H:ASP157 3.6 118.3 1.0 ND2 H:ASN170 3.7 100.7 1.0 OD2 H:ASP159 4.1 123.1 1.0 N H:ASN170 4.2 53.0 1.0 CB H:ASP173 4.2 70.5 1.0 N H:SER161 4.2 51.2 1.0 CB H:ASP157 4.2 90.0 1.0 N H:ASP159 4.3 57.3 1.0 CA H:SER161 4.3 50.5 1.0 N H:ALA158 4.4 83.9 1.0 CA H:ASP157 4.4 68.1 1.0 O H:ASN170 4.4 89.3 1.0 CB H:ASN170 4.5 56.0 1.0 CB H:ASP159 4.6 81.1 1.0 CA H:ASN170 4.6 40.8 1.0 C H:ASN170 4.7 51.1 1.0 C H:ASP157 4.7 64.9 1.0 CA H:ASP159 4.7 62.0 1.0 C H:ASP159 4.8 64.5 1.0 N H:THR160 5.0 59.5 1.0

Calcium binding site 9 out of 45 in the The Archaellum of Methanocaldococcus Villosus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of The Archaellum of Methanocaldococcus Villosus within 5.0Å range: probe atom residue distance (Å) B Occ I:Ca301 b:71.8 occ:1.00 OD1 I:ASN166 2.3 66.2 1.0 OD1 I:ASP154 2.3 102.7 1.0 OD2 I:ASP156 2.3 83.2 1.0 OD1 I:ASP156 2.3 94.2 1.0 OG I:SER158 2.3 56.0 1.0 OD1 I:ASP169 2.4 86.5 1.0 OD2 I:ASP169 2.4 94.2 1.0 CG I:ASP156 2.6 92.9 1.0 CG I:ASP169 2.7 88.3 1.0 CG I:ASN166 3.1 87.0 1.0 CG I:ASP154 3.3 113.1 1.0 ND2 I:ASN166 3.4 105.3 1.0 CB I:SER158 3.5 62.4 1.0 N I:SER158 3.9 43.9 1.0 OD2 I:ASP154 4.1 127.3 1.0 CB I:ASP156 4.1 74.6 1.0 CA I:SER158 4.2 45.2 1.0 CB I:ASP154 4.2 95.6 1.0 CB I:ASP169 4.2 77.0 1.0 N I:ASN166 4.3 54.4 1.0 N I:ASP156 4.4 54.9 1.0 CB I:ASN166 4.5 58.7 1.0 CA I:ASP154 4.5 73.7 1.0 N I:LEU159 4.5 54.7 1.0 O I:VAL164 4.6 51.7 1.0 CA I:ASP156 4.6 49.9 1.0 CA I:ASN166 4.7 44.3 1.0 O I:ASN166 4.7 89.0 1.0 N I:ASP155 4.7 76.2 1.0 N I:LYS157 4.7 51.6 1.0 C I:ASN166 4.8 50.6 1.0 C I:ASP156 4.8 55.3 1.0 C I:ASP154 4.8 71.7 1.0 C I:SER158 4.9 47.4 1.0

Calcium binding site 10 out of 45 in the The Archaellum of Methanocaldococcus Villosus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of The Archaellum of Methanocaldococcus Villosus within 5.0Å range: probe atom residue distance (Å) B Occ J:Ca301 b:65.1 occ:1.00 OD1 J:ASN170 2.2 54.6 1.0 OD1 J:ASP159 2.3 71.7 1.0 OD2 J:ASP173 2.3 82.5 1.0 OG J:SER161 2.3 75.7 1.0 OD1 J:ASP173 2.3 79.6 1.0 OD1 J:ASP157 2.4 87.1 1.0 CG J:ASP173 2.7 86.0 1.0 CG J:ASP157 3.2 89.8 1.0 CG J:ASN170 3.2 78.4 1.0 CB J:SER161 3.3 67.0 1.0 CG J:ASP159 3.4 98.6 1.0 OD2 J:ASP157 3.6 116.0 1.0 ND2 J:ASN170 3.7 99.5 1.0 OD2 J:ASP159 4.1 121.4 1.0 N J:ASN170 4.1 53.1 1.0 CB J:ASP173 4.2 75.7 1.0 N J:SER161 4.2 47.8 1.0 N J:ASP159 4.3 55.0 1.0 CB J:ASP157 4.3 92.0 1.0 CA J:SER161 4.3 45.0 1.0 N J:ALA158 4.4 87.5 1.0 O J:ASN170 4.4 96.9 1.0 CB J:ASN170 4.4 57.2 1.0 CA J:ASP157 4.4 69.5 1.0 CB J:ASP159 4.6 75.8 1.0 CA J:ASN170 4.6 41.2 1.0 C J:ASN170 4.7 56.4 1.0 C J:ASP157 4.7 66.4 1.0 CA J:ASP159 4.7 55.7 1.0 C J:ASP159 4.9 59.5 1.0 N J:THR160 5.0 58.0 1.0

L.Gambelli, M.N.Isupov, R.Conners, M.Mclaren, A.Bellack, V.Gold, R.Rachel, B.Daum. An Archaellum Filament Composed of Two Alternating Subunits. Nat Commun V. 13 710 2022.
ISSN: ESSN 2041-1723
PubMed: 35132062
DOI: 10.1038/S41467-022-28337-1