Calcium in PDB 7or1: Cryo-Em Structure of the Human TRPA1 Ion Channel in Complex with the Antagonist 3-60, Conformation 1

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of the Human TRPA1 Ion Channel in Complex with the Antagonist 3-60, Conformation 1 (pdb code 7or1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Cryo-Em Structure of the Human TRPA1 Ion Channel in Complex with the Antagonist 3-60, Conformation 1, PDB code: 7or1:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 7or1

Go back to Calcium Binding Sites List in 7or1
Calcium binding site 1 out of 5 in the Cryo-Em Structure of the Human TRPA1 Ion Channel in Complex with the Antagonist 3-60, Conformation 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of the Human TRPA1 Ion Channel in Complex with the Antagonist 3-60, Conformation 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1204

b:114.0
occ:1.00
OD1 A:ASN805 2.5 103.2 1.0
OE2 A:GLU788 2.5 115.4 1.0
OE1 A:GLN791 3.1 122.9 1.0
CD A:GLU788 3.3 115.4 1.0
OE1 A:GLU788 3.3 115.4 1.0
OE1 A:GLU808 3.3 89.3 1.0
CG A:ASN805 3.7 103.2 1.0
CD A:GLN791 4.0 122.9 1.0
CA A:ASN805 4.2 103.2 1.0
NE2 A:GLN791 4.3 122.9 1.0
CD A:GLU808 4.3 89.3 1.0
N A:ASN805 4.4 103.2 1.0
CB A:ASN805 4.5 103.2 1.0
OG A:SER804 4.6 98.0 1.0
ND2 A:ASN805 4.7 103.2 1.0
C A:SER804 4.7 98.0 1.0
CG A:GLU788 4.7 115.4 1.0
O A:SER804 4.8 98.0 1.0
CE1 A:TYR799 5.0 118.6 1.0

Calcium binding site 2 out of 5 in 7or1

Go back to Calcium Binding Sites List in 7or1
Calcium binding site 2 out of 5 in the Cryo-Em Structure of the Human TRPA1 Ion Channel in Complex with the Antagonist 3-60, Conformation 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of the Human TRPA1 Ion Channel in Complex with the Antagonist 3-60, Conformation 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1204

b:117.0
occ:1.00
OD1 B:ASN805 2.5 104.1 1.0
OE2 B:GLU788 2.5 117.0 1.0
OE1 B:GLN791 3.1 124.1 1.0
CD B:GLU788 3.3 117.0 1.0
OE1 B:GLU788 3.3 117.0 1.0
OE1 B:GLU808 3.3 91.0 1.0
CG B:ASN805 3.7 104.1 1.0
CD B:GLN791 4.0 124.1 1.0
CA B:ASN805 4.2 104.1 1.0
NE2 B:GLN791 4.3 124.1 1.0
CD B:GLU808 4.3 91.0 1.0
N B:ASN805 4.4 104.1 1.0
CB B:ASN805 4.5 104.1 1.0
OG B:SER804 4.6 99.6 1.0
ND2 B:ASN805 4.7 104.1 1.0
C B:SER804 4.7 99.6 1.0
CG B:GLU788 4.7 117.0 1.0
O B:SER804 4.8 99.6 1.0
CE1 B:TYR799 5.0 119.3 1.0

Calcium binding site 3 out of 5 in 7or1

Go back to Calcium Binding Sites List in 7or1
Calcium binding site 3 out of 5 in the Cryo-Em Structure of the Human TRPA1 Ion Channel in Complex with the Antagonist 3-60, Conformation 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Structure of the Human TRPA1 Ion Channel in Complex with the Antagonist 3-60, Conformation 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1207

b:128.2
occ:1.00
O B:HOH1313 4.6 64.7 1.0
O A:HOH1312 4.7 63.7 1.0
O D:HOH1311 4.7 64.2 1.0
O C:HOH1312 4.7 64.0 1.0

Calcium binding site 4 out of 5 in 7or1

Go back to Calcium Binding Sites List in 7or1
Calcium binding site 4 out of 5 in the Cryo-Em Structure of the Human TRPA1 Ion Channel in Complex with the Antagonist 3-60, Conformation 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo-Em Structure of the Human TRPA1 Ion Channel in Complex with the Antagonist 3-60, Conformation 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1204

b:113.6
occ:1.00
OD1 C:ASN805 2.5 102.2 1.0
OE2 C:GLU788 2.5 114.7 1.0
OE1 C:GLN791 3.1 121.7 1.0
CD C:GLU788 3.3 114.7 1.0
OE1 C:GLU788 3.3 114.7 1.0
OE1 C:GLU808 3.3 88.7 1.0
CG C:ASN805 3.7 102.2 1.0
CD C:GLN791 4.0 121.7 1.0
CA C:ASN805 4.2 102.2 1.0
NE2 C:GLN791 4.3 121.7 1.0
CD C:GLU808 4.3 88.7 1.0
N C:ASN805 4.4 102.2 1.0
CB C:ASN805 4.5 102.2 1.0
OG C:SER804 4.6 97.6 1.0
ND2 C:ASN805 4.7 102.2 1.0
C C:SER804 4.7 97.6 1.0
CG C:GLU788 4.7 114.7 1.0
O C:SER804 4.8 97.6 1.0
CE1 C:TYR799 5.0 117.4 1.0

Calcium binding site 5 out of 5 in 7or1

Go back to Calcium Binding Sites List in 7or1
Calcium binding site 5 out of 5 in the Cryo-Em Structure of the Human TRPA1 Ion Channel in Complex with the Antagonist 3-60, Conformation 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cryo-Em Structure of the Human TRPA1 Ion Channel in Complex with the Antagonist 3-60, Conformation 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca1205

b:114.4
occ:1.00
OD1 D:ASN805 2.5 103.0 1.0
OE2 D:GLU788 2.5 115.4 1.0
OE1 D:GLN791 3.1 122.8 1.0
CD D:GLU788 3.3 115.4 1.0
OE1 D:GLU788 3.3 115.4 1.0
OE1 D:GLU808 3.3 90.3 1.0
CG D:ASN805 3.7 103.0 1.0
CD D:GLN791 4.0 122.8 1.0
CA D:ASN805 4.2 103.0 1.0
NE2 D:GLN791 4.3 122.8 1.0
CD D:GLU808 4.3 90.3 1.0
N D:ASN805 4.4 103.0 1.0
CB D:ASN805 4.5 103.0 1.0
OG D:SER804 4.6 98.6 1.0
ND2 D:ASN805 4.7 103.0 1.0
C D:SER804 4.7 98.6 1.0
CG D:GLU788 4.7 115.4 1.0
O D:SER804 4.8 98.6 1.0
CE1 D:TYR799 5.0 118.4 1.0

Reference:

M.Grieben, B.G.Saward, A.C.W.Pike, C.J.Schofield, E.P.Carpenter. Cryo-Em Structure of the Human TRPA1 Ion Channel in Complex with the Antagonist 3-60 To Be Published.
Page generated: Fri Jul 19 02:35:35 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy