Calcium in PDB 7oui: Structure of C2S2M2-Type Photosystem Supercomplex From Arabidopsis Thaliana (Digitonin-Extracted)

Enzymatic activity of Structure of C2S2M2-Type Photosystem Supercomplex From Arabidopsis Thaliana (Digitonin-Extracted)

All present enzymatic activity of Structure of C2S2M2-Type Photosystem Supercomplex From Arabidopsis Thaliana (Digitonin-Extracted):
1.10.3.9;

Other elements in 7oui:

The structure of Structure of C2S2M2-Type Photosystem Supercomplex From Arabidopsis Thaliana (Digitonin-Extracted) also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Magnesium (Mg) 222 atoms
Chlorine (Cl) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of C2S2M2-Type Photosystem Supercomplex From Arabidopsis Thaliana (Digitonin-Extracted) (pdb code 7oui). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Structure of C2S2M2-Type Photosystem Supercomplex From Arabidopsis Thaliana (Digitonin-Extracted), PDB code: 7oui:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 7oui

Go back to Calcium Binding Sites List in 7oui
Calcium binding site 1 out of 4 in the Structure of C2S2M2-Type Photosystem Supercomplex From Arabidopsis Thaliana (Digitonin-Extracted)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of C2S2M2-Type Photosystem Supercomplex From Arabidopsis Thaliana (Digitonin-Extracted) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca416

b:49.2
occ:1.00
 NE2 A:GLN165 2.3 20.8 1.0
OD1 A:ASP170 2.4 29.2 1.0
CG A:ASP170 2.8 29.2 1.0
OD2 A:ASP170 2.9 29.2 1.0
CD A:GLN165 3.3 20.8 1.0
CG A:GLN165 3.5 20.8 1.0
CB A:GLN165 3.7 20.8 1.0
O A:HOH501 3.7 35.7 1.0
CB A:ASP170 3.9 29.2 1.0
OH A:TYR161 3.9 22.6 1.0
OE2 A:GLU189 4.0 35.8 1.0
NH1 C:ARG357 4.0 27.2 1.0
OE1 A:GLU189 4.2 35.8 1.0
O A:HOH518 4.2 50.5 1.0
OE1 A:GLN165 4.4 20.8 1.0
CD A:GLU189 4.5 35.8 1.0
CZ A:TYR161 4.5 22.6 1.0
O A:HOH515 4.6 45.6 1.0
CE2 A:TYR161 4.6 22.6 1.0
O C:HOH613 4.7 48.2 1.0
CA A:GLN165 4.9 20.8 1.0
CA A:ASP170 4.9 29.2 1.0
NH2 C:ARG357 5.0 27.2 1.0

Calcium binding site 2 out of 4 in 7oui

Go back to Calcium Binding Sites List in 7oui
Calcium binding site 2 out of 4 in the Structure of C2S2M2-Type Photosystem Supercomplex From Arabidopsis Thaliana (Digitonin-Extracted)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of C2S2M2-Type Photosystem Supercomplex From Arabidopsis Thaliana (Digitonin-Extracted) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca627

b:68.2
occ:1.00
 O B:GLU266 3.9 34.5 1.0
O B:ILE80 4.1 40.2 1.0
O B:PRO50 4.2 38.8 1.0
CB B:PRO50 4.4 38.8 1.0
CE B:MET55 4.6 34.4 1.0
OE1 B:GLU266 4.6 34.5 1.0
CG1 B:ILE80 4.7 40.2 1.0
C B:GLU266 4.7 34.5 1.0
CG B:MET55 4.7 34.4 1.0
CB B:PRO54 4.8 32.4 1.0
O B:HOH709 4.8 39.6 1.0
CB B:GLU266 4.8 34.5 1.0
CA B:PRO50 4.8 38.8 1.0
N B:MET55 4.9 34.4 1.0
CH2 B:TRP167 5.0 28.3 1.0
C B:PRO50 5.0 38.8 1.0

Calcium binding site 3 out of 4 in 7oui

Go back to Calcium Binding Sites List in 7oui
Calcium binding site 3 out of 4 in the Structure of C2S2M2-Type Photosystem Supercomplex From Arabidopsis Thaliana (Digitonin-Extracted)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of C2S2M2-Type Photosystem Supercomplex From Arabidopsis Thaliana (Digitonin-Extracted) within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Ca416

b:49.5
occ:1.00
 NE2 a:GLN165 2.3 21.1 1.0
OD1 a:ASP170 2.4 29.4 1.0
CG a:ASP170 2.8 29.4 1.0
OD2 a:ASP170 2.9 29.4 1.0
CD a:GLN165 3.3 21.1 1.0
CG a:GLN165 3.5 21.1 1.0
CB a:GLN165 3.7 21.1 1.0
O a:HOH501 3.7 36.0 1.0
CB a:ASP170 3.9 29.4 1.0
OH a:TYR161 3.9 22.4 1.0
OE2 a:GLU189 4.0 36.2 1.0
NH1 c:ARG357 4.0 26.7 1.0
OE1 a:GLU189 4.2 36.2 1.0
O a:HOH518 4.2 50.5 1.0
OE1 a:GLN165 4.4 21.1 1.0
CD a:GLU189 4.5 36.2 1.0
CZ a:TYR161 4.5 22.4 1.0
O a:HOH515 4.6 46.3 1.0
CE2 a:TYR161 4.6 22.4 1.0
O c:HOH613 4.7 47.6 1.0
CA a:GLN165 4.9 21.1 1.0
CA a:ASP170 4.9 29.4 1.0
NH2 c:ARG357 5.0 26.7 1.0

Calcium binding site 4 out of 4 in 7oui

Go back to Calcium Binding Sites List in 7oui
Calcium binding site 4 out of 4 in the Structure of C2S2M2-Type Photosystem Supercomplex From Arabidopsis Thaliana (Digitonin-Extracted)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of C2S2M2-Type Photosystem Supercomplex From Arabidopsis Thaliana (Digitonin-Extracted) within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Ca627

b:68.0
occ:1.00
 O b:GLU266 3.9 34.4 1.0
O b:ILE80 4.1 40.7 1.0
O b:PRO50 4.2 38.2 1.0
CB b:PRO50 4.4 38.2 1.0
CE b:MET55 4.6 33.9 1.0
OE1 b:GLU266 4.6 34.4 1.0
CG1 b:ILE80 4.7 40.7 1.0
C b:GLU266 4.7 34.4 1.0
CG b:MET55 4.7 33.9 1.0
CB b:PRO54 4.8 32.2 1.0
O b:HOH709 4.8 39.5 1.0
CB b:GLU266 4.8 34.4 1.0
CA b:PRO50 4.8 38.2 1.0
N b:MET55 4.9 33.9 1.0
CH2 b:TRP167 5.0 28.5 1.0
C b:PRO50 5.0 38.2 1.0

Reference:

A.T.Graca, M.Hall, K.Persson, W.P.Schroder. High-Resolution Model of Arabidopsis Photosystem II Reveals the Structural Consequences of Digitonin-Extraction. Sci Rep V. 11 15534 2021.
ISSN: ESSN 2045-2322
PubMed: 34330992
DOI: 10.1038/S41598-021-94914-X
Page generated: Sat Aug 21 12:41:40 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy