Calcium in PDB 7p1f: Structure of Kdnase From Aspergillus Terrerus in Complex with 2,3- Didehydro-2,3-Dideoxy-D-Glycero-D-Galacto-Nonulosonic Acid.

The structure of Structure of Kdnase From Aspergillus Terrerus in Complex with 2,3- Didehydro-2,3-Dideoxy-D-Glycero-D-Galacto-Nonulosonic Acid., PDB code: 7p1f was solved by T.M.Gloster, S.A.Mcmahon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	92.80 / 1.45
Space group	P 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	61.318, 66.833, 92.813, 90, 90.76, 90
R / Rfree (%)	15.2 / 19.9

The binding sites of Calcium atom in the Structure of Kdnase From Aspergillus Terrerus in Complex with 2,3- Didehydro-2,3-Dideoxy-D-Glycero-D-Galacto-Nonulosonic Acid. (pdb code 7p1f). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of Kdnase From Aspergillus Terrerus in Complex with 2,3- Didehydro-2,3-Dideoxy-D-Glycero-D-Galacto-Nonulosonic Acid., PDB code: 7p1f:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of Kdnase From Aspergillus Terrerus in Complex with 2,3- Didehydro-2,3-Dideoxy-D-Glycero-D-Galacto-Nonulosonic Acid.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Kdnase From Aspergillus Terrerus in Complex with 2,3- Didehydro-2,3-Dideoxy-D-Glycero-D-Galacto-Nonulosonic Acid. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca504 b:15.0 occ:1.00 O1 B:GOL502 2.2 30.3 1.0 OD1 B:ASP84 2.3 15.6 1.0 O B:GLY113 2.3 16.4 1.0 O B:GLY115 2.4 17.5 1.0 ND2 B:ASN86 2.4 12.7 1.0 O B:HOH717 2.4 15.1 1.0 O3 B:GOL502 2.5 28.3 1.0 C1 B:GOL502 2.9 21.6 1.0 C B:GLY113 3.4 16.5 1.0 CG B:ASP84 3.4 14.6 1.0 CG B:ASN86 3.5 13.4 1.0 C B:GLY115 3.6 18.8 1.0 C3 B:GOL502 3.7 31.3 1.0 OD2 B:ASP84 3.8 19.4 1.0 OD1 B:ASN86 3.8 17.3 1.0 C2 B:GOL502 3.9 28.6 1.0 CA B:GLY113 4.0 14.7 1.0 C B:SER114 4.2 18.1 1.0 N B:GLY115 4.3 18.6 1.0 N B:SER114 4.4 16.9 1.0 O B:SER114 4.4 17.1 1.0 CA B:ASP116 4.4 20.2 1.0 N B:ASP116 4.5 18.6 1.0 CA B:GLY115 4.5 19.3 1.0 O B:HOH726 4.6 38.5 1.0 O B:ILE85 4.6 10.7 1.0 O B:GLY117 4.7 14.7 1.0 CB B:ASP84 4.7 11.1 1.0 CA B:SER114 4.7 17.1 1.0 CB B:ASN86 4.8 12.3 1.0 N B:ILE85 4.8 11.4 1.0 C B:ILE85 4.9 11.5 1.0 O2 B:GOL502 4.9 30.9 1.0 CA B:ASP84 5.0 10.3 1.0

Calcium binding site 2 out of 2 in the Structure of Kdnase From Aspergillus Terrerus in Complex with 2,3- Didehydro-2,3-Dideoxy-D-Glycero-D-Galacto-Nonulosonic Acid.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Kdnase From Aspergillus Terrerus in Complex with 2,3- Didehydro-2,3-Dideoxy-D-Glycero-D-Galacto-Nonulosonic Acid. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:15.2 occ:1.00 O A:GLY113 2.3 15.3 1.0 OD1 A:ASP84 2.3 18.4 1.0 O A:GLY115 2.3 17.3 1.0 O A:HOH707 2.4 15.1 1.0 O1 A:GOL502 2.4 21.6 1.0 OD1 A:ASN86 2.4 13.4 1.0 O2 A:GOL502 2.5 22.3 1.0 C A:GLY113 3.4 15.1 1.0 CG A:ASP84 3.4 17.4 1.0 C2 A:GOL502 3.4 24.4 1.0 C1 A:GOL502 3.5 26.5 1.0 CG A:ASN86 3.5 14.4 1.0 C A:GLY115 3.6 17.8 1.0 OD2 A:ASP84 3.8 23.2 1.0 ND2 A:ASN86 3.8 15.1 1.0 CA A:GLY113 4.0 15.1 1.0 C A:SER114 4.2 17.5 1.0 N A:GLY115 4.3 20.5 1.0 N A:SER114 4.4 15.3 1.0 O A:SER114 4.4 17.5 1.0 CA A:ASP116 4.4 18.4 1.0 N A:ASP116 4.4 18.0 1.0 CA A:GLY115 4.5 15.3 1.0 O A:ILE85 4.6 12.4 1.0 O A:HOH683 4.6 40.2 1.0 O A:GLY117 4.7 15.2 1.0 CB A:ASP84 4.7 17.7 1.0 CA A:SER114 4.7 17.5 1.0 C3 A:GOL502 4.8 29.4 1.0 CB A:ASN86 4.8 12.8 1.0 N A:ILE85 4.9 12.9 1.0 C A:ILE85 4.9 12.1 1.0 CA A:ASP84 5.0 15.7 1.0

T.M.Gloster, S.A.Mcmahon. Structure of Kdnase From Aspergillus Terrerus in Complex with 2,3-Didehydro-2, 3-Dideoxy-D-Glycero-D-Galacto-Nonulosonic Acid. To Be Published.