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Calcium in PDB 7p4o: Crystal Structure of Autotaxin and 9(R)-DELTA6A,10A-Thc

Enzymatic activity of Crystal Structure of Autotaxin and 9(R)-DELTA6A,10A-Thc

All present enzymatic activity of Crystal Structure of Autotaxin and 9(R)-DELTA6A,10A-Thc:
3.1.4.39;

Protein crystallography data

The structure of Crystal Structure of Autotaxin and 9(R)-DELTA6A,10A-Thc, PDB code: 7p4o was solved by M.C.Eymery, A.A.Mccarthy, J.Hausmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.29 / 1.69
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 53.841, 62.361, 64.356, 103.7, 98.37, 93.44
R / Rfree (%) 17.1 / 20.6

Other elements in 7p4o:

The structure of Crystal Structure of Autotaxin and 9(R)-DELTA6A,10A-Thc also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Iodine (I) 12 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Autotaxin and 9(R)-DELTA6A,10A-Thc (pdb code 7p4o). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Autotaxin and 9(R)-DELTA6A,10A-Thc, PDB code: 7p4o:

Calcium binding site 1 out of 1 in 7p4o

Go back to Calcium Binding Sites List in 7p4o
Calcium binding site 1 out of 1 in the Crystal Structure of Autotaxin and 9(R)-DELTA6A,10A-Thc


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Autotaxin and 9(R)-DELTA6A,10A-Thc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca907

b:20.8
occ:1.00
OD1 A:ASP739 2.2 16.5 1.0
OD1 A:ASN741 2.3 24.5 1.0
O A:LEU745 2.3 23.0 1.0
O A:HOH1230 2.4 27.7 1.0
OD1 A:ASP747 2.4 22.9 1.0
OD1 A:ASP743 2.4 20.7 1.0
CG A:ASP743 3.3 22.4 1.0
CG A:ASP739 3.4 18.0 1.0
CG A:ASN741 3.4 25.5 1.0
C A:LEU745 3.5 19.9 1.0
CG A:ASP747 3.6 27.5 1.0
OD2 A:ASP743 3.8 24.9 1.0
ND2 A:ASN741 3.9 31.3 1.0
CA A:ASP739 3.9 18.9 1.0
N A:ASP747 4.0 22.2 1.0
N A:LEU745 4.1 16.1 1.0
C A:ARG746 4.1 22.5 1.0
CA A:ASP747 4.2 18.5 1.0
CB A:ASP739 4.2 17.1 1.0
CA A:LEU745 4.2 18.8 1.0
O A:ARG746 4.2 23.7 1.0
N A:ASP743 4.3 19.9 1.0
OD2 A:ASP739 4.3 18.5 1.0
O A:PHE738 4.4 19.9 1.0
OD2 A:ASP747 4.4 26.9 1.0
OE1 A:GLU751 4.5 37.2 1.0
C A:ASP739 4.5 18.3 1.0
N A:ASN741 4.5 19.8 1.0
CB A:LEU745 4.5 19.6 1.0
CB A:ASP747 4.5 24.1 1.0
H A:GLY744 4.5 21.6 1.0
N A:ARG746 4.5 18.3 1.0
CB A:ASP743 4.6 24.6 1.0
N A:TYR742 4.7 22.7 1.0
N A:TYR740 4.7 18.0 1.0
CB A:ASN741 4.7 21.9 1.0
CA A:ARG746 4.7 18.8 1.0
N A:GLY744 4.8 18.0 1.0
CA A:ASP743 4.8 22.2 1.0
C A:ASN741 4.8 21.8 1.0
CA A:ASN741 4.9 19.8 1.0
C A:ASP743 5.0 19.9 1.0

Reference:

M.C.Eymery, A.A.Andrew, J.Hausmann. Linking the Endocannabinoid System and Medicinal Cannabis to Autotaxin-Lysophosphatic Acid Signaling To Be Published.
Page generated: Tue Apr 4 18:24:34 2023

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