Calcium in PDB 7p70: The Pdz-Domain of SNTB1 Complexed with the Pdz-Binding Motif of HPV35- E6

The structure of The Pdz-Domain of SNTB1 Complexed with the Pdz-Binding Motif of HPV35- E6, PDB code: 7p70 was solved by G.Gogl, A.Cousido-Siah, G.Trave, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.90 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	54.8, 60.58, 140.64, 90, 90, 90
R / Rfree (%)	18.3 / 20.9

The binding sites of Calcium atom in the The Pdz-Domain of SNTB1 Complexed with the Pdz-Binding Motif of HPV35- E6 (pdb code 7p70). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the The Pdz-Domain of SNTB1 Complexed with the Pdz-Binding Motif of HPV35- E6, PDB code: 7p70:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in the The Pdz-Domain of SNTB1 Complexed with the Pdz-Binding Motif of HPV35- E6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Pdz-Domain of SNTB1 Complexed with the Pdz-Binding Motif of HPV35- E6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca601 b:73.4 occ:1.00 O A:GLY226 2.5 50.4 1.0 OE1 A:GLU229 2.6 57.5 1.0 O A:VAL227 2.7 48.9 1.0 OE2 A:GLU229 2.9 56.8 1.0 CD A:GLU229 3.1 49.9 1.0 C A:GLY226 3.5 43.6 1.0 C A:VAL227 3.9 43.0 1.0 CA A:GLY226 4.3 45.9 1.0 N A:VAL227 4.3 44.0 1.0 CA A:VAL227 4.5 50.5 1.0 CG A:GLU229 4.6 39.1 1.0 CB A:VAL227 4.7 40.4 1.0 N A:GLU229 4.9 39.0 1.0 N A:ASP228 5.0 43.6 1.0

Calcium binding site 2 out of 5 in the The Pdz-Domain of SNTB1 Complexed with the Pdz-Binding Motif of HPV35- E6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Pdz-Domain of SNTB1 Complexed with the Pdz-Binding Motif of HPV35- E6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca602 b:82.8 occ:1.00 O A:HOH783 2.4 59.4 1.0 O A:LYS264 2.4 48.2 1.0 OE1 A:GLU272 2.4 65.5 1.0 O A:HOH731 2.5 73.0 1.0 CD A:GLU272 3.0 58.5 1.0 O A:LEU267 3.1 37.2 1.0 OE2 A:GLU272 3.1 66.1 1.0 C A:LYS264 3.5 43.1 1.0 CG A:LYS264 3.6 56.2 1.0 CA A:LYS264 4.2 43.9 1.0 C A:LEU267 4.2 37.5 1.0 CG A:GLU272 4.3 42.2 1.0 CB A:LYS264 4.5 46.2 1.0 N A:SER265 4.5 36.4 1.0 CA A:SER268 4.6 30.9 1.0 CE A:LYS264 4.6 67.8 1.0 CD A:LYS264 4.7 63.4 1.0 CA A:SER265 4.7 39.3 1.0 N A:SER268 4.9 32.4 1.0 CB A:GLU272 5.0 31.9 1.0

Calcium binding site 3 out of 5 in the The Pdz-Domain of SNTB1 Complexed with the Pdz-Binding Motif of HPV35- E6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Pdz-Domain of SNTB1 Complexed with the Pdz-Binding Motif of HPV35- E6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca603 b:80.0 occ:1.00 O A:HOH824 2.5 51.3 1.0 OD1 A:ASP338 2.5 70.5 1.0 O A:HOH873 2.5 59.0 1.0 O A:GLY296 2.6 53.5 1.0 O A:HOH821 2.8 57.6 1.0 O A:GLY298 3.0 61.8 1.0 OD2 A:ASP338 3.2 75.9 1.0 CG A:ASP338 3.2 68.8 1.0 C A:GLY296 3.7 55.2 1.0 O A:MET294 3.8 49.5 1.0 OG1 A:THR299 3.9 54.0 1.0 O A:HOH852 3.9 52.5 1.0 O A:LEU297 3.9 62.6 1.0 C A:MET294 3.9 44.5 1.0 C A:GLY298 3.9 59.9 1.0 C A:LEU297 4.1 55.9 1.0 C A:LYS295 4.2 57.4 1.0 N A:LYS295 4.2 48.0 1.0 O A:LYS295 4.3 64.6 1.0 N A:GLY296 4.3 53.0 1.0 CA A:MET294 4.4 38.2 1.0 N A:GLY298 4.4 56.4 1.0 CA A:LYS295 4.6 58.2 1.0 N A:LEU297 4.6 54.4 1.0 CA A:LEU297 4.6 46.5 1.0 CA A:GLY296 4.6 52.6 1.0 CB A:ASP338 4.7 63.9 1.0 CA A:GLY298 4.7 60.1 1.0 N A:THR299 4.8 57.0 1.0 CA A:THR299 4.9 48.5 1.0 CB A:THR299 5.0 53.2 1.0

Calcium binding site 4 out of 5 in the The Pdz-Domain of SNTB1 Complexed with the Pdz-Binding Motif of HPV35- E6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of The Pdz-Domain of SNTB1 Complexed with the Pdz-Binding Motif of HPV35- E6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca604 b:49.1 occ:1.00 O A:ARG381 2.4 47.1 1.0 O A:GLY378 2.4 41.6 1.0 O A:GLY383 2.4 43.0 1.0 O A:HOH879 2.4 57.9 1.0 OE1 A:GLU423 2.5 42.6 1.0 OE2 A:GLU423 2.6 40.8 1.0 O A:HOH912 2.8 53.8 1.0 CD A:GLU423 2.9 44.0 1.0 C A:GLY378 3.3 43.1 1.0 C A:GLY383 3.5 43.5 1.0 C A:ARG381 3.6 52.2 1.0 N A:GLY383 3.6 47.0 1.0 CA A:GLY383 4.0 49.7 1.0 C A:LYS382 4.1 50.6 1.0 CA A:GLY378 4.1 44.5 1.0 N A:VAL379 4.2 39.1 1.0 CA A:VAL379 4.3 41.4 1.0 CA A:LYS382 4.3 53.8 1.0 N A:LYS382 4.4 50.9 1.0 N A:ARG381 4.4 50.2 1.0 CG A:GLU423 4.4 36.7 1.0 C A:VAL379 4.5 43.8 1.0 OG1 A:THR384 4.5 44.7 1.0 N A:THR384 4.6 47.4 1.0 O A:VAL379 4.6 50.1 1.0 CA A:ARG381 4.6 52.1 1.0 O A:HOH723 4.6 45.2 1.0 CG A:ARG381 4.6 45.6 1.0 O A:LYS382 4.9 53.6 1.0 CA A:THR384 4.9 48.2 1.0

Calcium binding site 5 out of 5 in the The Pdz-Domain of SNTB1 Complexed with the Pdz-Binding Motif of HPV35- E6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of The Pdz-Domain of SNTB1 Complexed with the Pdz-Binding Motif of HPV35- E6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca605 b:29.0 occ:1.00 O A:MET454 2.3 27.3 1.0 O A:GLY456 2.4 29.4 1.0 O A:GLY458 2.4 29.0 1.0 OD2 A:ASP498 2.5 29.0 1.0 OD1 A:ASP498 2.5 28.8 1.0 CG A:ASP498 2.8 28.4 1.0 C A:MET454 3.4 21.3 1.0 C A:GLY458 3.6 35.3 1.0 C A:GLY456 3.6 28.1 1.0 CA A:MET454 4.0 25.4 1.0 N A:GLY458 4.0 33.3 1.0 N A:GLY456 4.1 26.7 1.0 CA A:GLY458 4.3 29.4 1.0 C A:LYS457 4.3 31.9 1.0 C A:LYS455 4.3 27.1 1.0 CB A:ASP498 4.3 26.7 1.0 OG1 A:THR459 4.4 32.1 1.0 N A:LYS455 4.5 24.7 1.0 CA A:GLY456 4.5 26.2 1.0 O A:LYS455 4.5 29.1 1.0 CB A:MET454 4.6 25.4 1.0 N A:THR459 4.6 26.8 1.0 N A:LYS457 4.6 30.2 1.0 O A:HOH729 4.6 25.1 1.0 O A:HOH894 4.7 52.8 1.0 CA A:LYS457 4.7 28.9 1.0 O A:LYS457 4.7 30.4 1.0 CA A:LYS455 4.8 27.5 1.0 CA A:THR459 4.8 30.3 1.0 O A:HOH742 5.0 39.7 1.0

G.Gogl, A.Cousido-Siah, G.Trave. The Pdz-Domain of SNTB1 Complexed with the Pdz-Binding Motif of HPV35-E6 To Be Published.